{ "type": "genome", "identifier": "GCA_018335065.1", "organism": "Thioalkalivibrio sp.", "title": "Thioalkalivibrio sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of Utah", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018335065.1", "bioproject": "PRJNA714934", "biosample": "SAMN18352249", "wgs_master": "JAGXKV000000000.1", "refseq_category": "na", "taxid": "2093813", "species_taxid": "2093813", "organism_name": "Thioalkalivibrio sp.", "infraspecific_name": "", "isolate": "GSL_GB14_16", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/10", "asm_name": "ASM1833506v1", "submitter": "University of Utah", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/335/065/GCA_018335065.1_ASM1833506v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-10", "dateModified": "2021-05-10", "datePublished": "2021-05-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Thioalkalivibrio sp." ], "sample_taxid": [ "2093813" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Great Salt Lake" ], "sample_host_location_id": [], "data_size": "0.488 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1710349", "Number of Sequences": "404", "Longest Sequences (bp)": "12993", "N50 (bp)": "4406", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.4", "Number of CDSs": "1294", "Average Protein Length": "271.6", "Coding Ratio (%)": "61.6", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thioalkalivibrio versutus", "strain": "strain=AL 2", "accession": "GCA_001999325.1", "taxid": 106634, "species_taxid": 106634, "relation_to_type": "type", "validated": true, "ani": 80.672, "matched_fragments": 219, "total_fragments": 346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio thiocyanoxidans", "strain": "strain=ARh2", "accession": "GCA_000385215.1", "taxid": 152475, "species_taxid": 152475, "relation_to_type": "type", "validated": true, "ani": 80.2632, "matched_fragments": 184, "total_fragments": 346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio halophilus", "strain": "strain=HL17", "accession": "GCA_001995255.1", "taxid": 252474, "species_taxid": 252474, "relation_to_type": "type", "validated": true, "ani": 79.6117, "matched_fragments": 156, "total_fragments": 346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio paradoxus", "strain": "strain=ARh 1", "accession": "GCA_000227685.3", "taxid": 108010, "species_taxid": 108010, "relation_to_type": "type", "validated": true, "ani": 77.3969, "matched_fragments": 89, "total_fragments": 346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio nitratireducens", "strain": "strain=DSM 14787", "accession": "GCA_000321415.2", "taxid": 186931, "species_taxid": 186931, "relation_to_type": "type", "validated": true, "ani": 77.1726, "matched_fragments": 100, "total_fragments": 346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, 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