{ "type": "genome", "identifier": "GCA_018335735.1", "organism": "Roseovarius sp.", "title": "Roseovarius sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Utah", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018335735.1", "bioproject": "PRJNA672823", "biosample": "SAMN18877724", "wgs_master": "JAGXRR000000000.1", "refseq_category": "na", "taxid": "1486281", "species_taxid": "1486281", "organism_name": "Roseovarius sp.", "infraspecific_name": "", "isolate": "CROMO_A_118", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/10", "asm_name": "ASM1833573v1", "submitter": "University of Utah", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/335/735/GCA_018335735.1_ASM1833573v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-10", "dateModified": "2021-05-10", "datePublished": "2021-05-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseovarius sp." ], "sample_taxid": [ "1486281" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:California" ], "sample_host_location_id": [], "data_size": "0.822 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 68.75, "contamination": 10.23, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2888473", "Number of Sequences": "491", "Longest Sequences (bp)": "40710", "N50 (bp)": "6020", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.9", "Number of CDSs": "2400", "Average Protein Length": "278.3", "Coding Ratio (%)": "69.4", "Number of rRNAs": "2", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius mucosus", "strain": "strain=DSM 17069", "accession": "GCA_000768555.3", "taxid": 215743, "species_taxid": 215743, "relation_to_type": "type", "validated": true, "ani": 87.913, "matched_fragments": 518, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius azorensis", "strain": "strain=DSM 100674", "accession": "GCA_900109455.1", "taxid": 1287727, "species_taxid": 1287727, "relation_to_type": "type", "validated": true, "ani": 80.5984, "matched_fragments": 340, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius tolerans", "strain": "strain=DSM 11457", "accession": "GCA_900109855.1", "taxid": 74031, "species_taxid": 74031, "relation_to_type": "type", "validated": true, "ani": 80.2473, "matched_fragments": 336, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius lutimaris", "strain": "strain=DSM 28463", "accession": "GCA_900115165.1", "taxid": 1005928, "species_taxid": 1005928, "relation_to_type": "type", "validated": true, "ani": 79.5994, "matched_fragments": 308, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius marisflavi", "strain": "strain=DSM 29327", "accession": "GCA_900142625.1", "taxid": 1054996, "species_taxid": 1054996, "relation_to_type": "type", "validated": true, "ani": 79.3295, "matched_fragments": 293, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius gaetbuli", "strain": "strain=CECT 8370", "accession": "GCA_900172365.1", "taxid": 1356575, "species_taxid": 1356575, "relation_to_type": "type", "validated": true, "ani": 79.1505, "matched_fragments": 305, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nitratireducens", "strain": "strain=TFZ", "accession": "GCA_002925845.1", "taxid": 2044597, "species_taxid": 2044597, "relation_to_type": "type", "validated": true, "ani": 79.0727, "matched_fragments": 239, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nubinhibens", "strain": "strain=ISM", "accession": "GCA_000152625.1", "taxid": 314263, "species_taxid": 314263, "relation_to_type": "type", "validated": true, "ani": 78.8424, "matched_fragments": 217, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius aestuarii", "strain": "strain=KCTC 22174", "accession": "GCA_019966515.1", "taxid": 475083, "species_taxid": 475083, "relation_to_type": "type", "validated": true, "ani": 77.7323, "matched_fragments": 156, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 77.4765, "matched_fragments": 184, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 77.3707, "matched_fragments": 133, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola onchidii", "strain": "strain=XY-99", "accession": "GCA_004959925.1", "taxid": 2562279, "species_taxid": 2562279, "relation_to_type": "type", "validated": true, "ani": 77.073, "matched_fragments": 110, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 76.6541, "matched_fragments": 104, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia rufa", "strain": "strain=MOLA 401", "accession": "GCA_000743715.1", "taxid": 1530186, "species_taxid": 1530186, "relation_to_type": "type", "validated": true, "ani": 76.5749, "matched_fragments": 82, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 75.9702, "matched_fragments": 61, "total_fragments": 763, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 68.75, "contamination": 10.23, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002080415.1", "gtdb_species": "s__Roseovarius mucosus_A", "ani": 96.1115, "matched_fragments": 605, "total_fragments": 763, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.86", "min_intra_species_ani": "96.11", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.79", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_000768555.3", "gtdb_species": "s__Roseovarius mucosus", "ani": 87.913, "matched_fragments": 518, "total_fragments": 763, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.95", "min_intra_species_ani": "96.93", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", 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2, "status": "-" }, { "accession": "GCF_000744325.1", "gtdb_species": "s__Roseovarius sp000744325", "ani": 83.8437, "matched_fragments": 458, "total_fragments": 763, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.231, "cell_length": 0.262, "doubling_h": null, "growth_tmp": 27.545, "optimum_tmp": 29.5, "optimum_ph": 7.55, "genome_size": 4176936.527, "gc_content": 62.642, "coding_genes": 4147.0, "rRNA16S_genes": 2.0, "tRNA_genes": 44.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.75, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, 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