{ "type": "genome", "identifier": "GCA_018336015.1", "organism": "Algoriphagus sp.", "title": "Algoriphagus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Utah", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018336015.1", "bioproject": "PRJNA672823", "biosample": "SAMN18877706", "wgs_master": "JAGXQZ000000000.1", "refseq_category": "na", "taxid": "1872435", "species_taxid": "1872435", "organism_name": "Algoriphagus sp.", "infraspecific_name": "", "isolate": "CROMO_A_58", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/10", "asm_name": "ASM1833601v1", "submitter": "University of Utah", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/336/015/GCA_018336015.1_ASM1833601v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-10", "dateModified": "2021-05-10", "datePublished": "2021-05-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Algoriphagus sp." ], "sample_taxid": [ "1872435" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:California" ], "sample_host_location_id": [], "data_size": "1.274 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 20.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4460771", "Number of Sequences": "107", "Longest Sequences (bp)": "285186", "N50 (bp)": "83051", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.9", "Number of CDSs": "3757", "Average Protein Length": "343.9", "Coding Ratio (%)": "86.9", "Number of rRNAs": "3", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus aquaeductus", "strain": "strain=T4", "accession": "GCA_003253485.1", "taxid": 475299, "species_taxid": 475299, "relation_to_type": "type", "validated": true, "ani": 82.8429, "matched_fragments": 818, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus sanaruensis", "strain": "strain=M8-2", "accession": "GCA_001593605.1", "taxid": 1727163, "species_taxid": 1727163, "relation_to_type": "type", "validated": true, "ani": 79.8612, "matched_fragments": 492, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus boritolerans", "strain": "strain=DSM 17298", "accession": "GCA_900108085.1", "taxid": 308111, "species_taxid": 308111, "relation_to_type": "type", "validated": true, "ani": 79.0829, "matched_fragments": 436, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus lacus", "strain": "strain=N3", "accession": "GCA_003583985.1", "taxid": 2056311, "species_taxid": 2056311, "relation_to_type": "type", "validated": true, "ani": 78.6811, "matched_fragments": 525, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus litoralis", "strain": "strain=DSL-12", "accession": "GCA_003259255.1", "taxid": 2202829, "species_taxid": 2202829, "relation_to_type": "type", "validated": true, "ani": 78.2282, "matched_fragments": 420, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus boseongensis", "strain": "strain=CECT 8446", "accession": "GCA_004362805.1", "taxid": 1442587, "species_taxid": 1442587, "relation_to_type": "type", "validated": true, "ani": 78.1942, "matched_fragments": 416, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus aestuariicola", "strain": "strain=JCM 31546", "accession": "GCA_017254835.1", "taxid": 1852016, "species_taxid": 1852016, "relation_to_type": "type", "validated": true, "ani": 77.7961, "matched_fragments": 309, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus alkaliphilus", "strain": "strain=DSM 22703", "accession": "GCA_900103735.1", "taxid": 279824, "species_taxid": 279824, "relation_to_type": "type", "validated": true, "ani": 77.7625, "matched_fragments": 395, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=DSM 25035", "accession": "GCA_900148515.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 77.2763, "matched_fragments": 210, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus resistens", "strain": "strain=NH1", "accession": "GCA_001442615.1", "taxid": 1750590, "species_taxid": 1750590, "relation_to_type": "type", "validated": true, "ani": 77.0907, "matched_fragments": 163, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus chordae", "strain": "strain=DSM 19830", "accession": "GCA_003254055.1", "taxid": 237019, "species_taxid": 237019, "relation_to_type": "type", "validated": true, "ani": 76.8179, "matched_fragments": 175, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus aquimarinus", "strain": "strain=DSM 23399", "accession": "GCA_900112005.1", "taxid": 237018, "species_taxid": 237018, "relation_to_type": "type", "validated": true, "ani": 76.7868, "matched_fragments": 165, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus marinus", "strain": "strain=am2", "accession": "GCA_001936475.1", "taxid": 1925762, "species_taxid": 1925762, "relation_to_type": "type", "validated": true, "ani": 76.6743, "matched_fragments": 198, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mongoliitalea daihaiensis", "strain": "strain=X100-76", "accession": "GCA_021596945.1", "taxid": 2782006, "species_taxid": 2782006, "relation_to_type": "type", "validated": true, "ani": 76.5671, "matched_fragments": 94, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella aquatica", "strain": "strain=JCM 19468", "accession": "GCA_022549755.1", "taxid": 1323734, "species_taxid": 1323734, "relation_to_type": "type", "validated": true, "ani": 76.4184, "matched_fragments": 90, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella aquatica", "strain": "strain=CGMCC 1.12479", "accession": "GCA_014637795.1", "taxid": 1323734, "species_taxid": 1323734, "relation_to_type": "type", "validated": true, "ani": 76.4018, "matched_fragments": 88, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodonellum psychrophilum", "strain": "strain=GCM71", "accession": "GCA_000473765.1", "taxid": 336828, "species_taxid": 336828, "relation_to_type": "type", "validated": true, "ani": 76.1709, "matched_fragments": 88, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodonellum psychrophilum", "strain": "strain=DSM 17998", "accession": "GCA_000381545.1", "taxid": 336828, "species_taxid": 336828, "relation_to_type": "type", "validated": true, "ani": 76.092, "matched_fragments": 89, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodonellum marinum", "strain": 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