{
    "type": "genome",
    "identifier": "GCA_018365495.1",
    "organism": "Streptococcus lutetiensis",
    "title": "Streptococcus lutetiensis",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018365495.1",
        "bioproject": "PRJNA698986",
        "biosample": "SAMN17800902",
        "wgs_master": "JAGZJV000000000.1",
        "refseq_category": "na",
        "taxid": "150055",
        "species_taxid": "150055",
        "organism_name": "Streptococcus lutetiensis",
        "infraspecific_name": "",
        "isolate": "L3_132_090G1_dasL3_132_090G1_concoct_45",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/16",
        "asm_name": "ASM1836549v1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "GCF_018365495.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/365/495/GCA_018365495.1_ASM1836549v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-16",
    "dateModified": "2021-05-16",
    "datePublished": "2021-05-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptococcus lutetiensis"
        ],
        "sample_taxid": [
            "150055"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Magee-Womens Hospital of UPMC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.532 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.48,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1880658",
        "Number of Sequences": "53",
        "Longest Sequences (bp)": "194171",
        "N50 (bp)": "72284",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.4",
        "Number of CDSs": "1968",
        "Average Protein Length": "278.8",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptococcus lutetiensis",
                "strain": "strain=NCTC13774",
                "accession": "GCA_900475675.1",
                "taxid": 150055,
                "species_taxid": 150055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.1494,
                "matched_fragments": 539,
                "total_fragments": 604,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus lutetiensis",
                "strain": "strain=FDAARGOS_1158",
                "accession": "GCA_016725165.1",
                "taxid": 150055,
                "species_taxid": 150055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.142,
                "matched_fragments": 536,
                "total_fragments": 604,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus lutetiensis",
                "strain": "strain=FDAARGOS_1018",
                "accession": "GCA_016403165.1",
                "taxid": 150055,
                "species_taxid": 150055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.7183,
                "matched_fragments": 554,
                "total_fragments": 604,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus infantarius",
                "strain": "strain=NCTC13760",
                "accession": "GCA_900459445.1",
                "taxid": 102684,
                "species_taxid": 102684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.9333,
                "matched_fragments": 496,
                "total_fragments": 604,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus infantarius subsp. infantarius",
                "strain": "strain=ATCC BAA-102",
                "accession": "GCA_000154985.1",
                "taxid": 150054,
                "species_taxid": 102684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.931,
                "matched_fragments": 498,
                "total_fragments": 604,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus equinus",
                "strain": "strain=ATCC 9812",
                "accession": "GCA_000187265.1",
                "taxid": 1335,
                "species_taxid": 1335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0457,
                "matched_fragments": 449,
                "total_fragments": 604,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus equinus",
                "strain": "strain=NCTC12969",
                "accession": "GCA_900459295.1",
                "taxid": 1335,
                "species_taxid": 1335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9834,
                "matched_fragments": 456,
                "total_fragments": 604,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus oriscaviae",
                "strain": "strain=HKU75",
                "accession": "GCA_018137985.1",
                "taxid": 2781599,
                "species_taxid": 2781599,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2673,
                "matched_fragments": 50,
                "total_fragments": 604,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.48,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900475675.1",
                "gtdb_species": "s__Streptococcus lutetiensis",
                "ani": 99.1494,
                "matched_fragments": 539,
                "total_fragments": 604,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "95.22",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 50,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000154985.1",
                "gtdb_species": "s__Streptococcus infantarius",
                "ani": 93.9011,
                "matched_fragments": 497,
                "total_fragments": 604,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.67",
                "min_intra_species_ani": "95.30",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 24,
                "status": "-"
            },
            {
                "accession": "GCF_900101445.1",
                "gtdb_species": "s__Streptococcus equinus_B",
                "ani": 93.2635,
                "matched_fragments": 494,
                "total_fragments": 604,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.02",
                "min_intra_species_ani": "95.22",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_900104225.1",
                "gtdb_species": "s__Streptococcus equinus_D",
                "ani": 88.9015,
                "matched_fragments": 474,
                "total_fragments": 604,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016461705.1",
                "gtdb_species": "s__Streptococcus vicugnae",
                "ani": 88.7241,
                "matched_fragments": 485,
                "total_fragments": 604,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000187265.1",
                "gtdb_species": "s__Streptococcus equinus",
                "ani": 88.0457,
                "matched_fragments": 449,
                "total_fragments": 604,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.03",
                "min_intra_species_ani": "95.86",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 42,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.157,
        "cell_length": -0.167,
        "doubling_h": -0.216,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.89,
        "genome_size": 1914457.333,
        "gc_content": 37.7,
        "coding_genes": 1743.25,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 67.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.285,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.969,
        "thermophilic_range_tmp": 0.03,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.943,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.056,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Streptococcaceae",
        "g__Streptococcus",
        "s__Streptococcus lutetiensis"
    ],
    "_genome_taxon": [
        "Streptococcus",
        "lutetiensis",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Streptococcaceae",
        "g__Streptococcus",
        "s__Streptococcus lutetiensis",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Streptococcaceae",
        "Streptococcus",
        "Streptococcus",
        "lutetiensis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}