{
    "type": "genome",
    "identifier": "GCA_018366775.1",
    "organism": "Actinomyces graevenitzii",
    "title": "Actinomyces graevenitzii",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018366775.1",
        "bioproject": "PRJNA698986",
        "biosample": "SAMN17800840",
        "wgs_master": "JAGZHL000000000.1",
        "refseq_category": "na",
        "taxid": "55565",
        "species_taxid": "55565",
        "organism_name": "Actinomyces graevenitzii",
        "infraspecific_name": "",
        "isolate": "L3_108_000G1_dasL3_108_000G1_metabat.metabat.69",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/16",
        "asm_name": "ASM1836677v1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/366/775/GCA_018366775.1_ASM1836677v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-16",
    "dateModified": "2021-05-16",
    "datePublished": "2021-05-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomyces graevenitzii"
        ],
        "sample_taxid": [
            "55565"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Magee-Womens Hospital of UPMC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.560 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1959695",
        "Number of Sequences": "57",
        "Longest Sequences (bp)": "153025",
        "N50 (bp)": "47746",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.9",
        "Number of CDSs": "1649",
        "Average Protein Length": "342.9",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_000159035.1",
                "taxid": 103621,
                "species_taxid": 103621,
                "relation_to_type": "type",
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                "total_fragments": 626,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces weissii",
                "strain": "strain=CCUG 61299",
                "accession": "GCA_016598775.1",
                "taxid": 675090,
                "species_taxid": 675090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.324,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces bovis",
                "strain": "strain=NCTC11535",
                "accession": "GCA_900444995.1",
                "taxid": 1658,
                "species_taxid": 1658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1702,
                "matched_fragments": 102,
                "total_fragments": 626,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces trachealis",
                "strain": "strain=zg-993",
                "accession": "GCA_015711475.2",
                "taxid": 2763540,
                "species_taxid": 2763540,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1294,
                "matched_fragments": 105,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces qiguomingii",
                "strain": "strain=410",
                "accession": "GCA_004102025.1",
                "taxid": 2057800,
                "species_taxid": 2057800,
                "relation_to_type": "type",
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                "ani": 77.9254,
                "matched_fragments": 81,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces succiniciruminis",
                "strain": "strain=AM4",
                "accession": "GCA_900002405.2",
                "taxid": 1522002,
                "species_taxid": 1522002,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.847,
                "matched_fragments": 109,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces procaprae",
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                "accession": "GCA_004798665.1",
                "taxid": 2560010,
                "species_taxid": 2560010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6393,
                "matched_fragments": 105,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces oricola",
                "strain": "strain=R5292",
                "accession": "GCA_004104015.1",
                "taxid": 206043,
                "species_taxid": 206043,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6327,
                "matched_fragments": 99,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces faecalis",
                "strain": "strain=ZJ34",
                "accession": "GCA_013184985.2",
                "taxid": 2722820,
                "species_taxid": 2722820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6069,
                "matched_fragments": 122,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces gaoshouyii",
                "strain": "strain=CGMCC 4.7372",
                "accession": "GCA_014646495.1",
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                "species_taxid": 1960083,
                "relation_to_type": "type",
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                "ani": 77.4954,
                "matched_fragments": 96,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces marmotae",
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                "accession": "GCA_009829655.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4395,
                "matched_fragments": 95,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces gaoshouyii",
                "strain": "strain=pika_113",
                "accession": "GCA_002072175.1",
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                "relation_to_type": "type",
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                "ani": 77.4056,
                "matched_fragments": 96,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000239695.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.21",
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                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_016598775.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "ani_circumscription_radius": 96.3414,
                "mean_intra_species_ani": "98.41",
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            },
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                "gtdb_species": "s__Actinomyces sp015711475",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Actinomycetaceae",
        "g__Actinomyces",
        "s__Actinomyces graevenitzii",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Actinomycetaceae",
        "Actinomyces",
        "Actinomyces",
        "graevenitzii"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}