{ "type": "genome", "identifier": "GCA_018366805.1", "organism": "Cutibacterium granulosum", "title": "Cutibacterium granulosum", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018366805.1", "bioproject": "PRJNA698986", "biosample": "SAMN17800838", "wgs_master": "JAGZHJ000000000.1", "refseq_category": "na", "taxid": "33011", "species_taxid": "33011", "organism_name": "Cutibacterium granulosum", "infraspecific_name": "", "isolate": "L3_098_000G1_dasL3_098_000G1_concoct_34_sub", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1836680v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/366/805/GCA_018366805.1_ASM1836680v1", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Cutibacterium granulosum" ], "sample_taxid": [ "33011" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.597 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2129112", "Number of Sequences": "386", "Longest Sequences (bp)": "34695", "N50 (bp)": "8321", "Gap Ratio (%)": "0.001832", "GCcontent (%)": "64.1", "Number of CDSs": "1485", "Average Protein Length": "317.0", "Coding Ratio (%)": "66.3", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cutibacterium granulosum", "strain": "strain=NCTC11865", "accession": "GCA_900186975.1", "taxid": 33011, "species_taxid": 33011, "relation_to_type": "type", "validated": true, "ani": 98.5855, "matched_fragments": 486, "total_fragments": 509, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cutibacterium granulosum", "strain": "strain=DSM 20700", "accession": "GCA_001700755.2", "taxid": 33011, "species_taxid": 33011, "relation_to_type": "type", "validated": true, "ani": 98.5301, "matched_fragments": 476, 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"below_threshold" }, { "organism_name": "Acidipropionibacterium jensenii", "strain": "strain=DSM 20535", "accession": "GCA_000425285.1", "taxid": 1749, "species_taxid": 1749, "relation_to_type": "type", "validated": true, "ani": 79.3251, "matched_fragments": 198, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipropionibacterium thoenii", "strain": "strain=DSM 20276", "accession": "GCA_000423445.1", "taxid": 1751, "species_taxid": 1751, "relation_to_type": "type", "validated": true, "ani": 79.2646, "matched_fragments": 195, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipropionibacterium virtanenii", "strain": "strain=JS278", "accession": "GCA_003325455.1", "taxid": 2057246, "species_taxid": 2057246, "relation_to_type": "type", "validated": true, "ani": 79.223, "matched_fragments": 216, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cutibacterium acnes", "strain": "strain=ATCC 6919", "accession": "GCA_003030305.1", "taxid": 1747, "species_taxid": 1747, "relation_to_type": "type", "validated": true, "ani": 78.5179, "matched_fragments": 139, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans aurantiacus", "strain": "strain=CPCC 204711", "accession": "GCA_003344635.1", "taxid": 2282477, "species_taxid": 2282477, "relation_to_type": "type", "validated": true, "ani": 77.257, "matched_fragments": 88, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans brevis", "strain": "strain=16Sb5-5", "accession": "GCA_003327535.1", "taxid": 2268447, "species_taxid": 2268447, "relation_to_type": "type", "validated": true, "ani": 77.1551, "matched_fragments": 107, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus defluvii", "strain": "strain=JCM 17540", "accession": "GCA_014489575.1", "taxid": 1285901, "species_taxid": 1285901, "relation_to_type": "type", "validated": true, "ani": 77.0162, "matched_fragments": 103, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 76.8267, "matched_fragments": 65, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides astragali", "strain": "strain=CGMCC 4.7327", "accession": "GCA_024436375.1", "taxid": 1776736, "species_taxid": 1776736, "relation_to_type": "type", "validated": true, "ani": 76.5932, "matched_fragments": 84, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 76.5543, "matched_fragments": 79, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces massasporeus", "strain": "strain=JCM 4139", "accession": "GCA_014648995.1", "taxid": 67324, "species_taxid": 67324, "relation_to_type": "type", "validated": true, "ani": 76.5449, "matched_fragments": 61, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces naganishii", "strain": "strain=JCM 4654", "accession": "GCA_014650575.1", "taxid": 285447, "species_taxid": 285447, "relation_to_type": "type", "validated": true, "ani": 76.2019, "matched_fragments": 68, "total_fragments": 509, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_900186975.1", "gtdb_species": 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