{
    "type": "genome",
    "identifier": "GCA_018367285.1",
    "organism": "Clostridiales bacterium",
    "title": "Clostridiales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018367285.1",
        "bioproject": "PRJNA698986",
        "biosample": "SAMN17800814",
        "wgs_master": "JAGZGL000000000.1",
        "refseq_category": "na",
        "taxid": "1898207",
        "species_taxid": "1898207",
        "organism_name": "Clostridiales bacterium",
        "infraspecific_name": "",
        "isolate": "L3_098_000G1_dasL3_098_000G1_concoct_52",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/16",
        "asm_name": "ASM1836728v1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/367/285/GCA_018367285.1_ASM1836728v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-16",
    "dateModified": "2021-05-16",
    "datePublished": "2021-05-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridiales bacterium"
        ],
        "sample_taxid": [
            "1898207"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Magee-Womens Hospital of UPMC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.989 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3534917",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "348662",
        "N50 (bp)": "174063",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.7",
        "Number of CDSs": "3379",
        "Average Protein Length": "305.8",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Cellulosilyticum ruminicola",
                "strain": "strain=JCM 14822",
                "accession": "GCA_001311925.1",
                "taxid": 425254,
                "species_taxid": 425254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9811,
                "matched_fragments": 161,
                "total_fragments": 1156,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulosilyticum lentocellum",
                "strain": "strain=DSM 5427",
                "accession": "GCA_000178835.2",
                "taxid": 29360,
                "species_taxid": 29360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8117,
                "matched_fragments": 168,
                "total_fragments": 1156,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_014384995.1",
                "gtdb_species": "s__Niameybacter stercoravium",
                "ani": 97.4163,
                "matched_fragments": 990,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Niameybacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "95.05",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017941635.1",
                "gtdb_species": "s__Cellulosilyticum sp017941635",
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                "matched_fragments": 160,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001282685.1",
                "gtdb_species": "s__Niameybacter massiliensis",
                "ani": 80.4028,
                "matched_fragments": 493,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Niameybacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900551325.1",
                "gtdb_species": "s__Niameybacter sp900551325",
                "ani": 79.768,
                "matched_fragments": 457,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Niameybacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001311925.1",
                "gtdb_species": "s__Cellulosilyticum ruminicola",
                "ani": 77.9787,
                "matched_fragments": 160,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015058045.1",
                "gtdb_species": "s__Cellulosilyticum sp015058045",
                "ani": 77.9586,
                "matched_fragments": 156,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002735925.1",
                "gtdb_species": "s__Cellulosilyticum sp002735925",
                "ani": 77.8399,
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                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000178835.2",
                "gtdb_species": "s__Cellulosilyticum lentocellum",
                "ani": 77.7917,
                "matched_fragments": 169,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.43",
                "min_intra_species_ani": "97.43",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017421915.1",
                "gtdb_species": "s__Cellulosilyticum sp017421915",
                "ani": 77.4627,
                "matched_fragments": 105,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018883705.1",
                "gtdb_species": "s__Cellulosilyticum pullistercoris",
                "ani": 77.2742,
                "matched_fragments": 107,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002007365.1",
                "gtdb_species": "s__Epulopiscium_D sp002007365",
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                "matched_fragments": 57,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Epulopiscium_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900095725.1",
                "gtdb_species": "s__FMMP01 sp900095725",
                "ani": 76.7139,
                "matched_fragments": 115,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__FMMP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.23,
        "cell_length": 0.351,
        "doubling_h": 0.36,
        "growth_tmp": 38.862,
        "optimum_tmp": 40.922,
        "optimum_ph": 6.957,
        "genome_size": 3719026.467,
        "gc_content": 40.959,
        "coding_genes": 3326.141,
        "rRNA16S_genes": 7.062,
        "tRNA_genes": 67.767,
        "gram_stain": 0.857,
        "sporulation": 0.615,
        "motility": 0.653,
        "range_salinity": 0.19,
        "facultative_respiration": 0.009,
        "anaerobic_respiration": 0.968,
        "aerobic_respiration": 0.021,
        "mesophilic_range_tmp": 0.809,
        "thermophilic_range_tmp": 0.154,
        "psychrophilic_range_tmp": 0.036,
        "bacillus_cell_shape": 0.897,
        "coccus_cell_shape": 0.08,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.01,
        "vibrio_cell_shape": 0.01,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Cellulosilyticaceae",
        "g__Zhenhengia",
        "s__Zhenhengia yiwuensis"
    ],
    "_genome_taxon": [
        "Clostridiales",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Cellulosilyticaceae",
        "g__Zhenhengia",
        "s__Zhenhengia yiwuensis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Cellulosilyticaceae",
        "Zhenhengia",
        "Zhenhengia",
        "yiwuensis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}