{ "type": "genome", "identifier": "GCA_018367625.1", "organism": "Streptococcus mitis", "title": "Streptococcus mitis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018367625.1", "bioproject": "PRJNA698986", "biosample": "SAMN17800796", "wgs_master": "JAGZFT000000000.1", "refseq_category": "na", "taxid": "28037", "species_taxid": "28037", "organism_name": "Streptococcus mitis", "infraspecific_name": "", "isolate": "L3_098_053G1_dasL3_098_053G1_concoct_13", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1836762v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/367/625/GCA_018367625.1_ASM1836762v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus mitis" ], "sample_taxid": [ "28037" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.521 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 96.78, "contamination": 1.39, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1827806", "Number of Sequences": "79", "Longest Sequences (bp)": "106148", "N50 (bp)": "42703", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.4", "Number of CDSs": "1672", "Average Protein Length": "310.0", "Coding Ratio (%)": "85.1", "Number of rRNAs": "1", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus mitis", "strain": "strain=FDAARGOS 1456", "accession": "GCA_019047825.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 95.901, "matched_fragments": 510, "total_fragments": 570, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus mitis", "strain": "strain=NCTC 12261", "accession": "GCA_000148585.3", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 95.85, "matched_fragments": 508, "total_fragments": 570, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus 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"GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 93.7201, "matched_fragments": 475, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gwangjuense", "strain": "strain=ChDC B345", "accession": "GCA_003627155.1", "taxid": 1433513, "species_taxid": 1433513, "relation_to_type": "type", "validated": true, "ani": 93.2977, "matched_fragments": 477, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus symci", "strain": "strain=C17", "accession": "GCA_006385165.1", "taxid": 2588991, "species_taxid": 2588991, "relation_to_type": "type", "validated": true, "ani": 93.1445, "matched_fragments": 468, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus shenyangsis", "strain": "strain=D19", "accession": "GCA_006385785.1", "taxid": 2589786, "species_taxid": 2589786, "relation_to_type": "type", "validated": true, "ani": 92.7134, "matched_fragments": 483, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=CCUG 28588", "accession": "GCA_001679535.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 91.621, "matched_fragments": 446, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=NCTC7465", "accession": "GCA_001457635.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 91.5625, "matched_fragments": 461, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 86.8774, "matched_fragments": 433, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 77.8398, "matched_fragments": 81, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7968, "matched_fragments": 117, "total_fragments": 570, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 96.78, "contamination": 1.39, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000148585.2", "gtdb_species": "s__Streptococcus mitis", "ani": 95.85, "matched_fragments": 508, "total_fragments": 570, 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