{ "type": "genome", "identifier": "GCA_018368095.1", "organism": "Bacteroides thetaiotaomicron", "title": "Bacteroides thetaiotaomicron", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018368095.1", "bioproject": "PRJNA698986", "biosample": "SAMN17800773", "wgs_master": "JAGZEW000000000.1", "refseq_category": "na", "taxid": "818", "species_taxid": "818", "organism_name": "Bacteroides thetaiotaomicron", "infraspecific_name": "", "isolate": "L3_079_029G1_dasL3_079_029G1_maxbin2.maxbin.007", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1836809v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/368/095/GCA_018368095.1_ASM1836809v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacteroides thetaiotaomicron" ], "sample_taxid": [ "818" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "1.782 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.19, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", 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"organism_name": "Bacteroides caecimuris", "strain": "strain=I48", "accession": "GCA_023277905.1", "taxid": 1796613, "species_taxid": 1796613, "relation_to_type": "type", "validated": true, "ani": 81.9719, "matched_fragments": 724, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides caccae", "strain": "strain=ATCC 43185", "accession": "GCA_025146315.1", "taxid": 47678, "species_taxid": 47678, "relation_to_type": "suspected-type", "validated": true, "ani": 81.5515, "matched_fragments": 775, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=FDAARGOS_1516", "accession": "GCA_020149745.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3812, "matched_fragments": 875, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=ATCC 8483", "accession": "GCA_025146775.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2906, "matched_fragments": 901, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercorirosoris", "strain": "strain=JCM 17103", "accession": "GCA_000614165.1", "taxid": 871324, "species_taxid": 871324, "relation_to_type": "type", "validated": true, "ani": 78.8509, "matched_fragments": 384, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercoris", "strain": "strain=ATCC 43183", "accession": "GCA_025147325.1", "taxid": 46506, "species_taxid": 46506, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4575, "matched_fragments": 281, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.19, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000011065.1", "gtdb_species": "s__Bacteroides thetaiotaomicron", "ani": 98.8625, "matched_fragments": 1746, "total_fragments": 1987, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "97.24", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.75", "num_clustered_genomes": 121, "status": "conclusive" }, { "accession": "GCF_900106755.1", "gtdb_species": "s__Bacteroides faecis", "ani": 89.1774, "matched_fragments": 1391, "total_fragments": 1987, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "98.92", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 29, 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