{ "type": "genome", "identifier": "GCA_018370855.1", "organism": "Streptococcus sp.", "title": "Streptococcus sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018370855.1", "bioproject": "PRJNA698986", "biosample": "SAMN17800636", "wgs_master": "JAGYZP000000000.1", "refseq_category": "na", "taxid": "1306", "species_taxid": "1306", "organism_name": "Streptococcus sp.", "infraspecific_name": "", "isolate": "L3_105_000G1_dasL3_105_000G1_maxbin2.maxbin.045", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837085v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/370/855/GCA_018370855.1_ASM1837085v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus sp." ], "sample_taxid": [ "1306" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.470 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.91, "contamination": 9.7, "strain_heterogeneity": 80.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1626330", "Number of Sequences": "488", "Longest Sequences (bp)": "20325", "N50 (bp)": "4283", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.4", "Number of CDSs": "1132", "Average Protein Length": "270.6", "Coding Ratio (%)": "56.5", "Number of rRNAs": "0", "Number of tRNAs": "14", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus salivarius", "strain": "strain=ATCC 7073", "accession": "GCA_900143035.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 96.6794, "matched_fragments": 279, "total_fragments": 290, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=JCM 5707", "accession": "GCA_019972895.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 96.6691, "matched_fragments": 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"salivarius" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }