{
    "type": "genome",
    "identifier": "GCA_018371105.1",
    "organism": "Fusobacterium sp.",
    "title": "Fusobacterium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018371105.1",
        "bioproject": "PRJNA698986",
        "biosample": "SAMN17801623",
        "wgs_master": "JAHALO000000000.1",
        "refseq_category": "na",
        "taxid": "68766",
        "species_taxid": "68766",
        "organism_name": "Fusobacterium sp.",
        "infraspecific_name": "",
        "isolate": "L3_105_357G1_dasL3_105_357G1_concoct_34",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/16",
        "asm_name": "ASM1837110v1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/371/105/GCA_018371105.1_ASM1837110v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-16",
    "dateModified": "2021-05-16",
    "datePublished": "2021-05-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fusobacterium sp."
        ],
        "sample_taxid": [
            "68766"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Magee-Womens Hospital of UPMC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.667 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2458181",
        "Number of Sequences": "76",
        "Longest Sequences (bp)": "200977",
        "N50 (bp)": "51664",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.3",
        "Number of CDSs": "2296",
        "Average Protein Length": "317.9",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Fusobacterium ulcerans",
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                "accession": "GCA_000158315.2",
                "taxid": 861,
                "species_taxid": 861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2329,
                "matched_fragments": 382,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium ulcerans",
                "strain": "strain=ATCC 49185",
                "accession": "GCA_003019675.1",
                "taxid": 861,
                "species_taxid": 861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1611,
                "matched_fragments": 384,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium varium",
                "strain": "strain=NCTC10560",
                "accession": "GCA_900637705.1",
                "taxid": 856,
                "species_taxid": 856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9783,
                "matched_fragments": 408,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium necrogenes",
                "strain": "strain=NCTC10723",
                "accession": "GCA_900450765.1",
                "taxid": 858,
                "species_taxid": 858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2191,
                "matched_fragments": 262,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium perfoetens",
                "strain": "strain=ATCC 29250",
                "accession": "GCA_000622245.1",
                "taxid": 852,
                "species_taxid": 852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6306,
                "matched_fragments": 194,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cetobacterium ceti",
                "strain": "strain=ATCC 700028",
                "accession": "GCA_900167275.1",
                "taxid": 180163,
                "species_taxid": 180163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2764,
                "matched_fragments": 173,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium nucleatum subsp. polymorphum",
                "strain": "strain=ATCC 10953",
                "accession": "GCA_000153625.1",
                "taxid": 76857,
                "species_taxid": 851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9582,
                "matched_fragments": 159,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium canifelinum",
                "strain": "strain=FDAARGOS_1126",
                "accession": "GCA_016724785.1",
                "taxid": 285729,
                "species_taxid": 285729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9532,
                "matched_fragments": 158,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium nucleatum subsp. polymorphum",
                "strain": "strain=NCTC10562",
                "accession": "GCA_001457555.1",
                "taxid": 76857,
                "species_taxid": 851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8438,
                "matched_fragments": 164,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium russii",
                "strain": "strain=593A",
                "accession": "GCA_000381725.1",
                "taxid": 854,
                "species_taxid": 854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2972,
                "matched_fragments": 96,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira hyodysenteriae",
                "strain": "strain=B78",
                "accession": "GCA_001013005.1",
                "taxid": 159,
                "species_taxid": 159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0432,
                "matched_fragments": 52,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachyspira intermedia",
                "strain": "strain=PWS/A",
                "accession": "GCA_000223215.1",
                "taxid": 84377,
                "species_taxid": 84377,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0288,
                "matched_fragments": 53,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900543175.1",
                "gtdb_species": "s__Fusobacterium_A sp900543175",
                "ani": 98.0269,
                "matched_fragments": 577,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.42",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900555845.1",
                "gtdb_species": "s__Fusobacterium_A sp900555845",
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                "matched_fragments": 362,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.55",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003019675.1",
                "gtdb_species": "s__Fusobacterium_A ulcerans",
                "ani": 80.1673,
                "matched_fragments": 384,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_905193685.1",
                "gtdb_species": "s__Fusobacterium_A sp900555485",
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                "matched_fragments": 356,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900683735.1",
                "gtdb_species": "s__Fusobacterium_A ulcerans_A",
                "ani": 80.0006,
                "matched_fragments": 407,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.94",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900637705.1",
                "gtdb_species": "s__Fusobacterium_A varium",
                "ani": 79.9713,
                "matched_fragments": 409,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
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                "mean_intra_species_ani": "99.17",
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                "num_clustered_genomes": 10,
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            },
            {
                "accession": "GCF_002356455.1",
                "gtdb_species": "s__Fusobacterium_A varium_A",
                "ani": 79.6918,
                "matched_fragments": 403,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
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                "mean_intra_species_ani": "99.56",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_019012925.1",
                "gtdb_species": "s__Fusobacterium_A sp019012925",
                "ani": 79.1827,
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900450765.1",
                "gtdb_species": "s__Fusobacterium_A necrogenes",
                "ani": 79.1823,
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_016900045.1",
                "gtdb_species": "s__Fusobacterium_A sp900549465",
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                "matched_fragments": 296,
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
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                "mean_intra_species_ani": "98.59",
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                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.211,
        "cell_length": 0.115,
        "doubling_h": -0.328,
        "growth_tmp": 36.952,
        "optimum_tmp": 33.86,
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        "coding_genes": 2416.99,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": null,
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        "thermophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 0.142,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.857,
        "coccobacillus_cell_shape": 0.0,
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        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
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        "p__Fusobacteriota",
        "c__Fusobacteriia",
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        "f__Fusobacteriaceae",
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        "s__Fusobacterium_A sp900543175"
    ],
    "_genome_taxon": [
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        "sp.",
        "d__Bacteria",
        "p__Fusobacteriota",
        "c__Fusobacteriia",
        "o__Fusobacteriales",
        "f__Fusobacteriaceae",
        "g__Fusobacterium_A",
        "s__Fusobacterium_A sp900543175",
        "Bacteria",
        "Fusobacteriota",
        "Fusobacteriia",
        "Fusobacteriales",
        "Fusobacteriaceae",
        "Fusobacterium",
        "A",
        "Fusobacterium",
        "A",
        "sp900543175"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}