{ "type": "genome", "identifier": "GCA_018371285.1", "organism": "Clostridium argentinense", "title": "Clostridium argentinense", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018371285.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801612", "wgs_master": "JAHALD000000000.1", "refseq_category": "na", "taxid": "29341", "species_taxid": "29341", "organism_name": "Clostridium argentinense", "infraspecific_name": "", "isolate": "L2_040_124G1_dasL2_040_124G1_metabat.metabat.4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837128v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/371/285/GCA_018371285.1_ASM1837128v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium argentinense" ], "sample_taxid": [ "29341" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.995 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3641054", "Number of Sequences": "209", "Longest Sequences (bp)": "141921", "N50 (bp)": "26605", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.3", "Number of CDSs": "3262", "Average Protein Length": "291.2", "Coding Ratio (%)": "78.3", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium faecium", "strain": "strain=N37", "accession": "GCA_014836835.1", "taxid": 2762223, "species_taxid": 2762223, "relation_to_type": "type", "validated": true, "ani": 99.5747, "matched_fragments": 970, "total_fragments": 1115, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Clostridium senegalense", "strain": "strain=type strain: JC122", "accession": "GCA_000285575.1", "taxid": 1465809, "species_taxid": 1465809, "relation_to_type": "type", "validated": true, "ani": 78.3569, "matched_fragments": 344, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium simiarum", "strain": "strain=MSJ-4", "accession": "GCA_018919175.1", "taxid": 2841506, "species_taxid": 2841506, "relation_to_type": "type", "validated": true, "ani": 77.9555, "matched_fragments": 181, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium ihumii", "strain": "strain=AP5", "accession": "GCA_000612845.1", "taxid": 1470356, "species_taxid": 1470356, "relation_to_type": "type", "validated": true, "ani": 77.9261, "matched_fragments": 366, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hathewaya histolytica", "strain": "strain=NCTC503", "accession": "GCA_901482605.1", "taxid": 1498, "species_taxid": 1498, "relation_to_type": "type", "validated": true, "ani": 77.3091, "matched_fragments": 131, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium punense", "strain": "strain=DSM 28650", "accession": "GCA_017874425.1", "taxid": 1054297, "species_taxid": 1054297, "relation_to_type": "type", "validated": true, "ani": 77.2859, "matched_fragments": 221, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium lundense", "strain": "strain=DSM 17049", "accession": "GCA_000619945.1", "taxid": 319475, "species_taxid": 319475, "relation_to_type": "type", "validated": true, "ani": 77.0455, "matched_fragments": 185, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tetanomorphum", "strain": "strain=DSM 4474", "accession": "GCA_017873215.1", "taxid": 1553, "species_taxid": 1553, "relation_to_type": "type", "validated": true, "ani": 76.8076, "matched_fragments": 198, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloimpatiens massiliensis", "strain": "strain=Mt13", "accession": "GCA_900184255.1", "taxid": 1658110, "species_taxid": 1658110, "relation_to_type": "type", "validated": true, "ani": 76.717, "matched_fragments": 179, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tagluense", "strain": "strain=A121", "accession": "GCA_003865095.1", "taxid": 360422, "species_taxid": 360422, "relation_to_type": "type", "validated": true, "ani": 76.6689, "matched_fragments": 173, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium hydrogeniformans", "strain": "strain=DSM 21757", "accession": "GCA_000686705.1", "taxid": 349933, "species_taxid": 349933, "relation_to_type": "type", "validated": true, "ani": 76.6154, "matched_fragments": 171, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gallinarum", "strain": "strain=Sa3CUN1", "accession": "GCA_014836325.1", "taxid": 2762246, "species_taxid": 2762246, "relation_to_type": "type", "validated": true, "ani": 76.1622, "matched_fragments": 146, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium autoethanogenum", "strain": "strain=DSM 10061", "accession": "GCA_000484505.2", "taxid": 84023, "species_taxid": 84023, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0956, "matched_fragments": 115, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cavendishii", "strain": "strain=DSM 21758", "accession": "GCA_900141845.1", "taxid": 349931, "species_taxid": 349931, "relation_to_type": "type", "validated": true, "ani": 76.0901, "matched_fragments": 187, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium massiliodielmoense", "strain": "strain=MT26", "accession": "GCA_900176615.1", "taxid": 1776385, "species_taxid": 1776385, "relation_to_type": "type", "validated": true, "ani": 75.9609, "matched_fragments": 134, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium thermobutyricum", "strain": "strain=DSM 4928", "accession": "GCA_002050515.1", "taxid": 29372, "species_taxid": 29372, "relation_to_type": "type", "validated": true, "ani": 75.7858, "matched_fragments": 173, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium grantii", "strain": "strain=DSM 8605", "accession": "GCA_900129965.1", "taxid": 40575, "species_taxid": 40575, "relation_to_type": "type", "validated": true, "ani": 75.6959, "matched_fragments": 116, "total_fragments": 1115, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium hydrogenum", "strain": "strain=CUEA01", "accession": "GCA_021432385.1", "taxid": 2855764, "species_taxid": 2855764, 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