{ "type": "genome", "identifier": "GCA_018371355.1", "organism": "Enterococcus gilvus", "title": "Enterococcus gilvus", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018371355.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801607", "wgs_master": "JAHAKY000000000.1", "refseq_category": "na", "taxid": "160453", "species_taxid": "160453", "organism_name": "Enterococcus gilvus", "infraspecific_name": "", "isolate": "L3_072_057G1_dasL3_072_057G1_concoct_10", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837135v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/371/355/GCA_018371355.1_ASM1837135v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus gilvus" ], "sample_taxid": [ "160453" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.795 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.52, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2772793", "Number of Sequences": "128", "Longest Sequences (bp)": "100046", "N50 (bp)": "34791", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.1", "Number of CDSs": "2622", "Average Protein Length": "297.0", "Coding Ratio (%)": "84.3", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus gilvus", "strain": "strain=DSM 15689", "accession": "GCA_001885915.1", "taxid": 160453, "species_taxid": 160453, "relation_to_type": "type", "validated": true, "ani": 99.6224, "matched_fragments": 825, "total_fragments": 866, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus gilvus", "strain": "strain=ATCC BAA-350", "accession": "GCA_000407545.1", "taxid": 160453, "species_taxid": 160453, "relation_to_type": "type", "validated": true, "ani": 99.609, "matched_fragments": 840, "total_fragments": 866, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus gilvus", "strain": "strain=ATCC BAA-350", "accession": "GCA_000394615.1", "taxid": 160453, "species_taxid": 160453, "relation_to_type": "type", "validated": true, "ani": 99.5722, "matched_fragments": 845, "total_fragments": 866, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus hulanensis", "strain": "strain=190-7", "accession": "GCA_005405485.1", "taxid": 2559929, "species_taxid": 2559929, "relation_to_type": "type", "validated": true, "ani": 81.7362, "matched_fragments": 581, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus malodoratus", "strain": "strain=DSM 20681", "accession": "GCA_001886025.1", "taxid": 71451, "species_taxid": 71451, "relation_to_type": "type", "validated": true, "ani": 81.7146, "matched_fragments": 586, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus avium", "strain": "strain=DSM 20679", "accession": "GCA_001885775.1", "taxid": 33945, "species_taxid": 33945, "relation_to_type": "type", "validated": true, "ani": 81.3977, "matched_fragments": 529, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus avium", "strain": "strain=ATCC 14025", "accession": "GCA_000407245.1", "taxid": 33945, "species_taxid": 33945, "relation_to_type": "type", "validated": true, "ani": 81.2929, "matched_fragments": 551, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hermanniensis", "strain": "strain=DSM 17122", "accession": "GCA_001885945.1", "taxid": 249189, "species_taxid": 249189, "relation_to_type": "type", "validated": true, "ani": 79.9256, "matched_fragments": 357, "total_fragments": 866, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"s__Enterococcus_A sp017315985", "ani": 81.2541, "matched_fragments": 537, "total_fragments": 866, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005405365.1", "gtdb_species": "s__Enterococcus_A xiangfangensis", "ani": 81.1828, "matched_fragments": 384, "total_fragments": 866, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.65", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_005405205.1", "gtdb_species": "s__Enterococcus_A pingfangensis", "ani": 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