{ "type": "genome", "identifier": "GCA_018372325.1", "organism": "Clostridium perfringens", "title": "Clostridium perfringens", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018372325.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801563", "wgs_master": "JAHAJG000000000.1", "refseq_category": "na", "taxid": "1502", "species_taxid": "1502", "organism_name": "Clostridium perfringens", "infraspecific_name": "", "isolate": "L2_023_015G1_dasL2_023_015G1_concoct_11", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837232v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/325/GCA_018372325.1_ASM1837232v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium perfringens" ], "sample_taxid": [ "1502" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.877 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3221086", "Number of Sequences": "260", "Longest Sequences (bp)": "107081", "N50 (bp)": "20245", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.0", "Number of CDSs": "2783", "Average Protein Length": "301.6", "Coding Ratio (%)": "78.2", "Number of rRNAs": "1", "Number of tRNAs": "55", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium perfringens", "strain": "strain=ATCC 13124", "accession": "GCA_000013285.1", "taxid": 1502, "species_taxid": 1502, "relation_to_type": "type", "validated": true, "ani": 96.5646, "matched_fragments": 862, "total_fragments": 945, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Clostridium perfringens", "strain": "strain=FDAARGOS_903", "accession": "GCA_016027375.1", "taxid": 1502, "species_taxid": 1502, "relation_to_type": "type", "validated": true, "ani": 96.51, "matched_fragments": 858, "total_fragments": 945, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Clostridium tarantellae", 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