{ "type": "genome", "identifier": "GCA_018372435.1", "organism": "Clostridiales bacterium", "title": "Clostridiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018372435.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801557", "wgs_master": "JAHAJA000000000.1", "refseq_category": "na", "taxid": "1898207", "species_taxid": "1898207", "organism_name": "Clostridiales bacterium", "infraspecific_name": "", "isolate": "L3_098_000G1_dasL3_098_000G1_metabat.metabat.68", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837243v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/435/GCA_018372435.1_ASM1837243v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridiales bacterium" ], "sample_taxid": [ "1898207" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "1.355 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4809846", "Number of Sequences": "71", "Longest Sequences (bp)": "490655", "N50 (bp)": "96292", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.8", "Number of CDSs": "4214", "Average Protein Length": "325.6", "Coding Ratio (%)": "85.6", "Number of rRNAs": "0", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerosporobacter mobilis", "strain": "strain=DSM 15930", "accession": "GCA_900142955.1", "taxid": 264463, "species_taxid": 264463, "relation_to_type": "type", "validated": true, "ani": 94.7399, "matched_fragments": 1377, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerosporobacter faecicola", "strain": "strain=KCTC 15857", "accession": "GCA_012070565.1", "taxid": 2718714, "species_taxid": 2718714, "relation_to_type": "type", "validated": true, "ani": 79.7663, "matched_fragments": 472, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobilisporobacter senegalensis", "strain": "strain=DSM 26537", "accession": "GCA_003752155.1", "taxid": 1329262, "species_taxid": 1329262, "relation_to_type": "type", "validated": true, "ani": 77.7667, "matched_fragments": 108, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerocolumna aminovalerica", "strain": "strain=DSM 1283", "accession": "GCA_900115365.1", "taxid": 1527, "species_taxid": 1527, "relation_to_type": "type", "validated": true, "ani": 77.7619, "matched_fragments": 97, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoclostridium phytofermentans", "strain": "strain=ISDg", "accession": "GCA_000018685.1", "taxid": 66219, "species_taxid": 66219, "relation_to_type": "type", "validated": true, "ani": 77.5357, "matched_fragments": 101, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerocolumna cellulosilytica", "strain": "strain=SN021", "accession": "GCA_014218335.1", "taxid": 433286, "species_taxid": 433286, "relation_to_type": "type", "validated": true, "ani": 76.9063, "matched_fragments": 92, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerocolumna cellulosilytica", "strain": "strain=DSM 100423", "accession": "GCA_014202875.1", "taxid": 433286, "species_taxid": 433286, "relation_to_type": "type", "validated": true, "ani": 76.878, "matched_fragments": 91, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnotalea glycerini", "strain": "strain=DSM 28816", "accession": "GCA_003201285.1", "taxid": 1763509, "species_taxid": 1763509, "relation_to_type": "type", "validated": true, "ani": 76.6218, "matched_fragments": 67, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018372435.1", "gtdb_species": "s__Anaerosporobacter sp018372435", "ani": 100.0, "matched_fragments": 1563, "total_fragments": 1569, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerosporobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.90", "min_intra_species_ani": "96.04", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_900142955.1", "gtdb_species": "s__Anaerosporobacter mobilis", "ani": 94.7367, "matched_fragments": 1377, "total_fragments": 1569, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerosporobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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