{ "type": "genome", "identifier": "GCA_018372475.1", "organism": "Enterococcus durans", "title": "Enterococcus durans", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018372475.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801555", "wgs_master": "JAHAIY000000000.1", "refseq_category": "na", "taxid": "53345", "species_taxid": "53345", "organism_name": "Enterococcus durans", "infraspecific_name": "", "isolate": "L3_101_054G1_dasL3_101_054G1_metabat.metabat.9", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837247v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/475/GCA_018372475.1_ASM1837247v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus durans" ], "sample_taxid": [ "53345" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.801 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2818967", "Number of Sequences": "137", "Longest Sequences (bp)": "91375", "N50 (bp)": "32305", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.9", "Number of CDSs": "2647", "Average Protein Length": "294.4", "Coding Ratio (%)": "82.9", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus durans", "strain": "strain=NBRC 100479", "accession": "GCA_001544215.1", "taxid": 53345, "species_taxid": 53345, "relation_to_type": "type", "validated": true, "ani": 99.5817, "matched_fragments": 799, "total_fragments": 874, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus durans", "strain": "strain=FDAARGOS 1437", "accession": "GCA_019048325.1", "taxid": 53345, "species_taxid": 53345, "relation_to_type": "type", "validated": true, "ani": 99.4769, "matched_fragments": 830, "total_fragments": 874, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus lactis", "strain": "strain=CCM 8412", "accession": "GCA_015751045.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 81.5061, "matched_fragments": 407, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=DSM 20160", "accession": "GCA_001885955.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 81.4615, "matched_fragments": 430, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000407425.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 81.4055, "matched_fragments": 438, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus lactis", "strain": "strain=LMG 25958", "accession": "GCA_015904215.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 81.389, "matched_fragments": 407, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000393835.1", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 81.3472, "matched_fragments": 450, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus hirae", "strain": "strain=ATCC 9790", "accession": "GCA_000271405.2", "taxid": 1354, "species_taxid": 1354, "relation_to_type": "type", "validated": true, "ani": 81.3468, "matched_fragments": 444, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus villorum", "strain": "strain=NBRC 100699", "accession": "GCA_007990225.1", "taxid": 112904, "species_taxid": 112904, "relation_to_type": "type", "validated": true, "ani": 80.8824, "matched_fragments": 434, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=DSM 4838", "accession": "GCA_002813755.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 80.1103, "matched_fragments": 363, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=NBRC 100490", "accession": "GCA_007990125.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 80.0713, "matched_fragments": 360, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=DSM 4838", "accession": "GCA_001886035.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 79.9701, "matched_fragments": 361, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=PartL-Efaecalis-RM8376", "accession": "GCA_022869705.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 78.431, "matched_fragments": 136, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus carniphilus", "strain": "strain=ATCC BAA-640", "accession": "GCA_014397115.1", "taxid": 218144, "species_taxid": 218144, "relation_to_type": "type", "validated": true, "ani": 78.244, "matched_fragments": 71, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus viikkiensis", "strain": "strain=LMG 26075", "accession": "GCA_005405345.1", "taxid": 930854, "species_taxid": 930854, "relation_to_type": "type", "validated": true, "ani": 77.8829, "matched_fragments": 103, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001544215.1", "gtdb_species": "s__Enterococcus_B durans", "ani": 99.5558, "matched_fragments": 800, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.77", "min_intra_species_ani": "96.42", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.77", "num_clustered_genomes": 135, "status": "conclusive" }, { "accession": "GCF_015751045.1", "gtdb_species": "s__Enterococcus_B lactis", "ani": 81.5123, "matched_fragments": 408, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.26", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.89", 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