{
    "type": "genome",
    "identifier": "GCA_018372595.1",
    "organism": "Ligilactobacillus salivarius",
    "title": "Ligilactobacillus salivarius",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018372595.1",
        "bioproject": "PRJNA698986",
        "biosample": "SAMN17801549",
        "wgs_master": "JAHAIS000000000.1",
        "refseq_category": "na",
        "taxid": "1624",
        "species_taxid": "1624",
        "organism_name": "Ligilactobacillus salivarius",
        "infraspecific_name": "",
        "isolate": "L3_072_362G1_dasL3_072_362G1_metabat.metabat.3",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/16",
        "asm_name": "ASM1837259v1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/595/GCA_018372595.1_ASM1837259v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-16",
    "dateModified": "2021-05-16",
    "datePublished": "2021-05-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ligilactobacillus salivarius"
        ],
        "sample_taxid": [
            "1624"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Magee-Womens Hospital of UPMC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.463 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1656290",
        "Number of Sequences": "24",
        "Longest Sequences (bp)": "297882",
        "N50 (bp)": "106486",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.7",
        "Number of CDSs": "1610",
        "Average Protein Length": "307.8",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_002079585.1",
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                "relation_to_type": "type",
                "validated": true,
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                "status": "conclusive"
            },
            {
                "organism_name": "Ligilactobacillus salivarius",
                "strain": "strain=DSM 20555",
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            },
            {
                "organism_name": "Ligilactobacillus salivarius",
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                "status": "conclusive"
            },
            {
                "organism_name": "Ligilactobacillus hayakitensis",
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                "accession": "GCA_001434455.1",
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                "species_taxid": 396716,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Ligilactobacillus hayakitensis",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ligilactobacillus apodemi",
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                "accession": "GCA_001434405.1",
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                "species_taxid": 307126,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ligilactobacillus apodemi",
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                "accession": "GCA_000615885.1",
                "taxid": 307126,
                "species_taxid": 307126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3324,
                "matched_fragments": 81,
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                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_001435955.1",
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                "min_intra_species_ani": "97.07",
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            },
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            {
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                "accession": "GCF_001591685.1",
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        ]
    },
    "_bac2feature": {
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    },
    "_gtdb_taxon": [
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        "s__Ligilactobacillus salivarius"
    ],
    "_genome_taxon": [
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        "p__Bacillota",
        "c__Bacilli",
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        "f__Lactobacillaceae",
        "g__Ligilactobacillus",
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        "Lactobacillales",
        "Lactobacillaceae",
        "Ligilactobacillus",
        "Ligilactobacillus",
        "salivarius"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
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        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}