{
    "type": "genome",
    "identifier": "GCA_018372795.1",
    "organism": "Akkermansia muciniphila",
    "title": "Akkermansia muciniphila",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018372795.1",
        "bioproject": "PRJNA698986",
        "biosample": "SAMN17801537",
        "wgs_master": "JAHAIG000000000.1",
        "refseq_category": "na",
        "taxid": "239935",
        "species_taxid": "239935",
        "organism_name": "Akkermansia muciniphila",
        "infraspecific_name": "",
        "isolate": "L2_040_365G1_dasL2_040_365G1_concoct_4",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/16",
        "asm_name": "ASM1837279v1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/795/GCA_018372795.1_ASM1837279v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-16",
    "dateModified": "2021-05-16",
    "datePublished": "2021-05-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Akkermansia muciniphila"
        ],
        "sample_taxid": [
            "239935"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Magee-Womens Hospital of UPMC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.773 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2738458",
        "Number of Sequences": "30",
        "Longest Sequences (bp)": "596495",
        "N50 (bp)": "185515",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.4",
        "Number of CDSs": "2262",
        "Average Protein Length": "343.9",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Akkermansia muciniphila",
                "strain": "strain=ATCC BAA-835",
                "accession": "GCA_000020225.1",
                "taxid": 239935,
                "species_taxid": 239935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.263,
                "matched_fragments": 814,
                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Akkermansia muciniphila",
                "strain": "strain=ATCC BAA-835",
                "accession": "GCA_017504145.1",
                "taxid": 239935,
                "species_taxid": 239935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.2459,
                "matched_fragments": 819,
                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Akkermansia muciniphila",
                "strain": "strain=DSM 22959",
                "accession": "GCA_008000975.1",
                "taxid": 239935,
                "species_taxid": 239935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.2443,
                "matched_fragments": 819,
                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Akkermansia glycaniphila",
                "strain": "strain=Pyt",
                "accession": "GCA_001683795.1",
                "taxid": 1679444,
                "species_taxid": 1679444,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2288,
                "matched_fragments": 95,
                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000020225.1",
                "gtdb_species": "s__Akkermansia muciniphila",
                "ani": 97.263,
                "matched_fragments": 814,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.03",
                "min_intra_species_ani": "97.15",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 200,
                "status": "conclusive"
            },
            {
                "accession": "GCA_905200945.1",
                "gtdb_species": "s__Akkermansia sp905200945",
                "ani": 94.7294,
                "matched_fragments": 794,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900184965.1",
                "gtdb_species": "s__Akkermansia muciniphila_A",
                "ani": 94.7126,
                "matched_fragments": 781,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "97.99",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_018847375.1",
                "gtdb_species": "s__Akkermansia muciniphila_B",
                "ani": 87.4573,
                "matched_fragments": 738,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "95.28",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 44,
                "status": "-"
            },
            {
                "accession": "GCF_002884975.1",
                "gtdb_species": "s__Akkermansia muciniphila_C",
                "ani": 85.9872,
                "matched_fragments": 718,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_018709685.1",
                "gtdb_species": "s__Akkermansia muciniphila_E",
                "ani": 85.8779,
                "matched_fragments": 686,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2687294.429,
        "gc_content": 55.767,
        "coding_genes": 2234.25,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 52.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Verrucomicrobiales",
        "f__Akkermansiaceae",
        "g__Akkermansia",
        "s__Akkermansia muciniphila"
    ],
    "_genome_taxon": [
        "Akkermansia",
        "muciniphila",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Verrucomicrobiales",
        "f__Akkermansiaceae",
        "g__Akkermansia",
        "s__Akkermansia muciniphila",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Verrucomicrobiales",
        "Akkermansiaceae",
        "Akkermansia",
        "Akkermansia",
        "muciniphila"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}