{ "type": "genome", "identifier": "GCA_018372955.1", "organism": "Clostridium baratii", "title": "Clostridium baratii", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018372955.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801533", "wgs_master": "JAHAIC000000000.1", "refseq_category": "na", "taxid": "1561", "species_taxid": "1561", "organism_name": "Clostridium baratii", "infraspecific_name": "", "isolate": "L2_013_037G1_dasL2_013_037G1_maxbin2.maxbin.017", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837295v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "GCF_018372955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/955/GCA_018372955.1_ASM1837295v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium baratii" ], "sample_taxid": [ "1561" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.820 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3041624", "Number of Sequences": "19", "Longest Sequences (bp)": "1014407", "N50 (bp)": "668549", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.0", "Number of CDSs": "2930", "Average Protein Length": "304.3", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium sardiniense", "strain": "strain=DSM 2632", "accession": "GCA_016907995.1", "taxid": 29369, "species_taxid": 29369, "relation_to_type": "type", "validated": true, "ani": 82.2652, "matched_fragments": 647, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium moniliforme", "strain": "strain=DSM 3984", "accession": "GCA_017873235.1", "taxid": 39489, "species_taxid": 39489, "relation_to_type": "type", "validated": true, "ani": 81.1247, "matched_fragments": 531, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium thermobutyricum", "strain": "strain=DSM 4928", "accession": "GCA_002050515.1", "taxid": 29372, "species_taxid": 29372, "relation_to_type": "type", "validated": true, "ani": 78.9276, "matched_fragments": 409, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium chrysemydis", "strain": "strain=PT", "accession": "GCA_015234215.1", "taxid": 2665504, "species_taxid": 2665504, "relation_to_type": "type", "validated": true, "ani": 78.8649, "matched_fragments": 380, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium paraputrificum", "strain": "strain=NCTC11833", "accession": "GCA_900447045.1", "taxid": 29363, "species_taxid": 29363, "relation_to_type": "type", "validated": true, "ani": 78.0019, "matched_fragments": 268, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cibarium", "strain": "strain=Sa3CVN1", "accession": "GCA_014836335.1", "taxid": 2762247, "species_taxid": 2762247, "relation_to_type": "type", "validated": true, "ani": 77.8412, "matched_fragments": 221, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saudiense", "strain": "strain=JCC", "accession": "GCA_000577815.1", "taxid": 1414720, "species_taxid": 1414720, "relation_to_type": "type", "validated": true, "ani": 77.6666, "matched_fragments": 267, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tertium", "strain": "strain=DSM 2485", "accession": "GCA_017873245.1", "taxid": 1559, "species_taxid": 1559, "relation_to_type": "type", "validated": true, "ani": 77.6355, "matched_fragments": 292, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cagae", "strain": "strain=Marseille-P4344", "accession": "GCA_900290265.1", "taxid": 2080751, "species_taxid": 2080751, "relation_to_type": "type", "validated": true, "ani": 77.5052, "matched_fragments": 291, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gallinarum", "strain": "strain=Sa3CUN1", "accession": "GCA_014836325.1", "taxid": 2762246, "species_taxid": 2762246, "relation_to_type": "type", "validated": true, "ani": 77.4944, "matched_fragments": 266, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharobutylicum", "strain": "strain=DSM 13864", "accession": "GCA_000473995.1", "taxid": 169679, "species_taxid": 169679, "relation_to_type": "type", "validated": true, "ani": 77.417, "matched_fragments": 264, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharobutylicum", "strain": "strain=DSM 13864", "accession": "GCA_001657435.1", "taxid": 169679, "species_taxid": 169679, "relation_to_type": "type", "validated": true, "ani": 77.348, "matched_fragments": 251, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharoperbutylacetonicum", "strain": "strain=N1-4(HMT)", "accession": "GCA_000340885.1", "taxid": 36745, "species_taxid": 36745, "relation_to_type": "type", "validated": true, "ani": 77.0981, "matched_fragments": 245, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharoperbutylacetonicum", "strain": "strain=ATCC 27021", "accession": "GCA_000334435.1", "taxid": 36745, "species_taxid": 36745, "relation_to_type": "type", "validated": true, "ani": 77.0825, "matched_fragments": 244, "total_fragments": 1005, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium neonatale", "strain": "strain=LCDC 99A005", "accession": "GCA_002553615.1", 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