{ "type": "genome", "identifier": "GCA_018372965.1", "organism": "Acinetobacter baumannii", "title": "Acinetobacter baumannii", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018372965.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801530", "wgs_master": "JAHAHZ000000000.1", "refseq_category": "na", "taxid": "470", "species_taxid": "470", "organism_name": "Acinetobacter baumannii", "infraspecific_name": "", "isolate": "L3_101_000G1_dasL3_101_000G1_concoct_93", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837296v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/372/965/GCA_018372965.1_ASM1837296v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter baumannii" ], "sample_taxid": [ "470" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "1.009 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.98, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3518313", "Number of Sequences": "603", "Longest Sequences (bp)": "84555", "N50 (bp)": "9743", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.9", "Number of CDSs": "2957", "Average Protein Length": "288.0", "Coding Ratio (%)": "72.6", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_000737145.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 97.8021, "matched_fragments": 719, "total_fragments": 851, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 97.7974, "matched_fragments": 719, "total_fragments": 851, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter 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