{ "type": "genome", "identifier": "GCA_018374615.1", "organism": "Proteus hauseri", "title": "Proteus hauseri", "description": "contaminated; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018374615.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801450", "wgs_master": "JAHAEX000000000.1", "refseq_category": "na", "taxid": "183417", "species_taxid": "183417", "organism_name": "Proteus hauseri", "infraspecific_name": "", "isolate": "L3_058_000G1_dasL3_058_000G1_metabat.metabat.110_sub", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837461v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/374/615/GCA_018374615.1_ASM1837461v1", "excluded_from_refseq": "contaminated; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Proteus hauseri" ], "sample_taxid": [ "183417" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "1.315 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.79, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4596735", "Number of Sequences": "530", "Longest Sequences (bp)": "65872", "N50 (bp)": "13384", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.2", "Number of CDSs": "3751", "Average Protein Length": "304.8", "Coding Ratio (%)": "74.6", "Number of rRNAs": "0", "Number of tRNAs": "62", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Proteus cibi", "strain": "strain=FJ2001126-3", "accession": "GCA_003144405.1", "taxid": 2050966, "species_taxid": 2050966, "relation_to_type": "type", "validated": true, "ani": 99.5587, "matched_fragments": 1060, "total_fragments": 1254, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Proteus columbae", "strain": "strain=08MAS2615", "accession": "GCA_002777965.1", "taxid": 1987580, "species_taxid": 1987580, "relation_to_type": "type", "validated": true, "ani": 93.312, "matched_fragments": 988, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Proteus faecis", "strain": "strain=TJ1636", "accession": "GCA_003144395.1", "taxid": 2050967, "species_taxid": 2050967, "relation_to_type": "type", "validated": true, "ani": 92.8413, "matched_fragments": 977, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Proteus alimentorum", "strain": "strain=08MAS0041", "accession": "GCA_002607735.1", "taxid": 1973495, "species_taxid": 1973495, "relation_to_type": "type", "validated": true, "ani": 92.7717, "matched_fragments": 950, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Proteus terrae subsp. cibarius", "strain": "strain=JCM 30699", "accession": "GCA_003144495.1", "taxid": 626774, "species_taxid": 1574161, "relation_to_type": "type", "validated": true, "ani": 92.0086, "matched_fragments": 983, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Proteus terrae", "strain": "strain=LMG 28659", "accession": "GCA_003144325.1", "taxid": 1574161, "species_taxid": 1574161, "relation_to_type": "type", "validated": true, "ani": 91.9201, "matched_fragments": 979, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Proteus penneri", "strain": "strain=FDAARGOS_874", "accession": "GCA_016028675.1", "taxid": 102862, "species_taxid": 102862, "relation_to_type": "type", "validated": true, "ani": 91.8926, "matched_fragments": 962, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Proteus penneri", "strain": "strain=NCTC12737", "accession": "GCA_900455015.1", "taxid": 102862, "species_taxid": 102862, "relation_to_type": "type", "validated": true, "ani": 91.8761, "matched_fragments": 966, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Proteus penneri", "strain": "strain=ATCC 33519", 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