{
    "type": "genome",
    "identifier": "GCA_018375495.1",
    "organism": "Clostridium sp.",
    "title": "Clostridium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018375495.1",
        "bioproject": "PRJNA698986",
        "biosample": "SAMN17801404",
        "wgs_master": "JAHADD000000000.1",
        "refseq_category": "na",
        "taxid": "1506",
        "species_taxid": "1506",
        "organism_name": "Clostridium sp.",
        "infraspecific_name": "",
        "isolate": "L2_047_000M1_dasL2_047_000M1_concoct_68",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/16",
        "asm_name": "ASM1837549v1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/375/495/GCA_018375495.1_ASM1837549v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-16",
    "dateModified": "2021-05-16",
    "datePublished": "2021-05-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridium sp."
        ],
        "sample_taxid": [
            "1506"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Magee-Womens Hospital of UPMC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.775 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2739597",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "343496",
        "N50 (bp)": "190571",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.2",
        "Number of CDSs": "2506",
        "Average Protein Length": "331.0",
        "Coding Ratio (%)": "90.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Wujia chipingensis",
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                "accession": "GCA_014337155.1",
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                "species_taxid": 2763670,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 818,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_025149915.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.5077,
                "matched_fragments": 98,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_000154425.1",
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                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.469,
                "matched_fragments": 99,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_000154065.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8185,
                "matched_fragments": 55,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_025150085.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7168,
                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ruminantium",
                "strain": "strain=ATCC 17233",
                "accession": "GCA_900167085.1",
                "taxid": 42322,
                "species_taxid": 42322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6048,
                "matched_fragments": 57,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia obeum",
                "strain": "strain=ATCC 29174",
                "accession": "GCA_025147765.1",
                "taxid": 40520,
                "species_taxid": 40520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2286,
                "matched_fragments": 61,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia obeum",
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                "accession": "GCA_000153905.1",
                "taxid": 40520,
                "species_taxid": 40520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.059,
                "matched_fragments": 62,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ramulus",
                "strain": "strain=ATCC 29099",
                "accession": "GCA_000469345.1",
                "taxid": 39490,
                "species_taxid": 39490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0014,
                "matched_fragments": 59,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jutongia huaianensis",
                "strain": "strain=NSJ-37",
                "accession": "GCA_014384985.1",
                "taxid": 2763668,
                "species_taxid": 2763668,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8928,
                "matched_fragments": 66,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jingyaoa shaoxingensis",
                "strain": "strain=NSJ-46",
                "accession": "GCA_014385005.1",
                "taxid": 2763671,
                "species_taxid": 2763671,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8711,
                "matched_fragments": 69,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_000156535.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8305,
                "matched_fragments": 72,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerostipes hadrus",
                "strain": "strain=DSM 3319",
                "accession": "GCA_000332875.2",
                "taxid": 649756,
                "species_taxid": 649756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5562,
                "matched_fragments": 56,
                "total_fragments": 904,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_014337155.1",
                "gtdb_species": "s__CAG-127 sp900319515",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.02",
                "min_intra_species_ani": "96.09",
                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 25,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.73",
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                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_018918185.1",
                "gtdb_species": "s__CAG-127 sp900539705",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127",
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            {
                "accession": "GCA_002404515.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.16,
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        "growth_tmp": 33.457,
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        "coding_genes": 3796.985,
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        "mesophilic_range_tmp": 0.944,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
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    "_gtdb_taxon": [
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    ],
    "_genome_taxon": [
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        "p__Bacillota_A",
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        "f__Lachnospiraceae",
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        "Bacteria",
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        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Wujia",
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    ],
    "_meo": [
        {
            "id": "MEO_0000054",
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    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}