{ "type": "genome", "identifier": "GCA_018375535.1", "organism": "[Eubacterium] siraeum", "title": "[Eubacterium] siraeum", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018375535.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801402", "wgs_master": "JAHADB000000000.1", "refseq_category": "na", "taxid": "39492", "species_taxid": "39492", "organism_name": "[Eubacterium] siraeum", "infraspecific_name": "", "isolate": "L2_047_000M1_dasL2_047_000M1_concoct_38", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837553v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/375/535/GCA_018375535.1_ASM1837553v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "[Eubacterium] siraeum" ], "sample_taxid": [ "39492" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.798 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": 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"status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.113, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 38.5, "optimum_ph": null, "genome_size": 2851111.2, "gc_content": 44.305, "coding_genes": 2279.0, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Ruminococcaceae", "g__Ruminiclostridium_E", "s__Ruminiclostridium_E siraeum" ], "_genome_taxon": [ "[Eubacterium]", "siraeum", "d__Bacteria", "p__Bacillota_A", 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