{ "type": "genome", "identifier": "GCA_018375635.1", "organism": "Eubacterium limosum", "title": "Eubacterium limosum", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018375635.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801396", "wgs_master": "JAHACV000000000.1", "refseq_category": "na", "taxid": "1736", "species_taxid": "1736", "organism_name": "Eubacterium limosum", "infraspecific_name": "", "isolate": "L2_047_000G1_dasL2_047_000G1_concoct_23", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837563v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/375/635/GCA_018375635.1_ASM1837563v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Eubacterium limosum" ], "sample_taxid": [ "1736" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.910 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.91, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, 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"cc_result": { "completeness": 94.91, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002441855.2", "gtdb_species": "s__Eubacterium maltosivorans", "ani": 98.5131, "matched_fragments": 887, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.42", "min_intra_species_ani": "98.37", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_000807675.2", "gtdb_species": "s__Eubacterium limosum", "ani": 89.7118, "matched_fragments": 812, "total_fragments": 935, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "97.93", "mean_intra_species_af": "0.93", 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