{ "type": "genome", "identifier": "GCA_018375775.1", "organism": "Bifidobacterium pseudolongum", "title": "Bifidobacterium pseudolongum", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018375775.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801389", "wgs_master": "JAHACO000000000.1", "refseq_category": "na", "taxid": "1694", "species_taxid": "1694", "organism_name": "Bifidobacterium pseudolongum", "infraspecific_name": "", "isolate": "L2_040_365G1_dasL2_040_365G1_concoct_72", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837577v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/375/775/GCA_018375775.1_ASM1837577v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium pseudolongum" ], "sample_taxid": [ "1694" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.553 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 76.6838, "matched_fragments": 98, "total_fragments": 627, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000741295.1", "gtdb_species": "s__Bifidobacterium globosum", "ani": 96.3569, "matched_fragments": 548, "total_fragments": 627, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.22", "min_intra_species_ani": "96.02", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.78", "num_clustered_genomes": 79, "status": "inconclusive" }, { "accession": 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