{ "type": "genome", "identifier": "GCA_018375975.1", "organism": "Weissella confusa", "title": "Weissella confusa", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018375975.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801380", "wgs_master": "JAHACF000000000.1", "refseq_category": "na", "taxid": "1583", "species_taxid": "1583", "organism_name": "Weissella confusa", "infraspecific_name": "", "isolate": "L3_069_242G1_dasL3_069_242G1_concoct_10", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837597v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/375/975/GCA_018375975.1_ASM1837597v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Weissella confusa" ], "sample_taxid": [ "1583" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.627 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2203343", "Number of Sequences": "32", "Longest Sequences (bp)": "305183", "N50 (bp)": "102561", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.8", "Number of CDSs": "2090", "Average Protein Length": "311.1", "Coding Ratio (%)": "88.5", "Number of rRNAs": "1", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Weissella cibaria", "strain": "strain=JCM 12495", "accession": "GCA_005405525.1", "taxid": 137591, "species_taxid": 137591, "relation_to_type": "type", "validated": true, "ani": 82.8236, "matched_fragments": 396, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella cibaria", "strain": "strain=KACC 11862", "accession": "GCA_000193635.2", "taxid": 137591, "species_taxid": 137591, "relation_to_type": "type", "validated": true, "ani": 82.7638, "matched_fragments": 382, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella ceti", "strain": "strain=CECT 7719", "accession": "GCA_018394055.1", "taxid": 759620, "species_taxid": 759620, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2197, "matched_fragments": 125, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella thailandensis", "strain": "strain=KCTC 3751", "accession": "GCA_003363255.1", "taxid": 89061, "species_taxid": 89061, "relation_to_type": "type", "validated": true, "ani": 78.9225, "matched_fragments": 123, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella paramesenteroides", "strain": "strain=ATCC 33313", "accession": "GCA_000160575.1", "taxid": 1249, "species_taxid": 1249, "relation_to_type": "type", "validated": true, "ani": 78.8688, "matched_fragments": 117, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella thailandensis", "strain": "strain=JCM 10695", "accession": "GCA_005405465.1", "taxid": 89061, "species_taxid": 89061, "relation_to_type": "type", "validated": true, "ani": 78.8655, "matched_fragments": 122, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella viridescens", "strain": "strain=NCDO 1655", "accession": "GCA_001460875.1", "taxid": 1629, "species_taxid": 1629, "relation_to_type": "type", "validated": true, "ani": 78.6927, "matched_fragments": 95, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella viridescens", "strain": "strain=NCTC13645", "accession": "GCA_900460455.1", "taxid": 1629, "species_taxid": 1629, "relation_to_type": "type", "validated": true, "ani": 78.6604, "matched_fragments": 104, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella jogaejeotgali", "strain": "strain=FOL01", "accession": "GCA_001932615.1", "taxid": 1631871, "species_taxid": 1631871, "relation_to_type": "type", "validated": true, "ani": 78.6595, "matched_fragments": 134, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella viridescens", "strain": "strain=DSM 20410", "accession": "GCA_001437355.1", "taxid": 1629, "species_taxid": 1629, "relation_to_type": "type", "validated": true, "ani": 78.6412, "matched_fragments": 106, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella hellenica", "strain": "strain=NBRC 15553", "accession": "GCA_005405545.1", "taxid": 46256, "species_taxid": 46256, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4605, "matched_fragments": 122, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Weissella hellenica", "strain": "strain=NBRC 15553", "accession": "GCA_006540065.1", "taxid": 46256, "species_taxid": 46256, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2913, "matched_fragments": 118, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Periweissella cryptocerci", "strain": "strain=26KH-42", "accession": "GCA_004358325.1", "taxid": 2506420, "species_taxid": 2506420, "relation_to_type": "type", "validated": true, "ani": 77.3476, "matched_fragments": 63, "total_fragments": 720, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001436895.1", "gtdb_species": "s__Weissella confusa", "ani": 97.7416, "matched_fragments": 644, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Weissella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 80, 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"gtdb_species": "s__Weissella cibaria", "ani": 82.7735, "matched_fragments": 381, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Weissella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.88", "num_clustered_genomes": 53, "status": "-" }, { "accession": "GCF_004521965.1", "gtdb_species": "s__Weissella cibaria_A", "ani": 82.1389, "matched_fragments": 332, "total_fragments": 720, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Weissella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018394055.1", "gtdb_species": "s__Weissella ceti", "ani": 79.2332, "matched_fragments": 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