{ "type": "genome", "identifier": "GCA_018376065.1", "organism": "Enterobacter sp.", "title": "Enterobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018376065.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801374", "wgs_master": "JAHABZ000000000.1", "refseq_category": "na", "taxid": "42895", "species_taxid": "42895", "organism_name": "Enterobacter sp.", "infraspecific_name": "", "isolate": "L3_069_051G1_dasL3_069_051G1_maxbin2.maxbin.004", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837606v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/376/065/GCA_018376065.1_ASM1837606v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacter sp." ], "sample_taxid": [ "42895" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "1.348 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.57, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4720109", "Number of Sequences": "177", "Longest Sequences (bp)": "219411", "N50 (bp)": "69765", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.2", "Number of CDSs": "4374", "Average Protein Length": "312.1", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "82", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 98.5701, "matched_fragments": 1384, "total_fragments": 1487, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter hormaechei subsp. hormaechei", "strain": "strain=ATCC 49162", "accession": "GCA_000213995.1", "taxid": 301105, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 98.5454, "matched_fragments": 1381, "total_fragments": 1487, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter hormaechei subsp. hormaechei", "strain": "strain=ATCC 49162", "accession": "GCA_001875655.1", "taxid": 301105, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 98.5256, "matched_fragments": 1388, "total_fragments": 1487, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterobacter hormaechei subsp. oharae", "strain": "strain=DSM 16687", "accession": "GCA_001729705.1", "taxid": 301102, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 94.9931, "matched_fragments": 1312, "total_fragments": 1487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. oharae", "strain": "strain=FDAARGOS_1533", "accession": "GCA_020097195.1", "taxid": 301102, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 94.9717, "matched_fragments": 1311, "total_fragments": 1487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. steigerwaltii", "strain": "strain=DSM 16691", "accession": "GCA_001729725.1", "taxid": 299766, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 94.9619, "matched_fragments": 1301, "total_fragments": 1487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. xiangfangensis", "strain": "strain=LMG27195", "accession": "GCA_001729785.1", "taxid": 1296536, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 94.7497, "matched_fragments": 1301, "total_fragments": 1487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hoffmannii", "strain": "strain=DSM 14563", "accession": "GCA_001729745.1", "taxid": 1812934, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 94.3099, "matched_fragments": 1299, "total_fragments": 1487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 88.1129, "matched_fragments": 1153, "total_fragments": 1487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 88.0576, "matched_fragments": 1202, "total_fragments": 1487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 87.5234, "matched_fragments": 1171, "total_fragments": 1487, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 87.3178, "matched_fragments": 1222, "total_fragments": 1487, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.57, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001875655.1", "gtdb_species": "s__Enterobacter hormaechei", "ani": 98.5256, "matched_fragments": 1388, "total_fragments": 1487, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 32, "status": "conclusive" }, { "accession": "GCF_011078175.1", "gtdb_species": "s__Enterobacter cloacae_Q", 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88.8266, "matched_fragments": 1200, "total_fragments": 1487, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.49", "min_intra_species_ani": "95.52", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 115, "status": "-" }, { "accession": "GCF_002208095.1", "gtdb_species": "s__Enterobacter cloacae_M", "ani": 87.8534, "matched_fragments": 1209, "total_fragments": 1487, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.7528, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "96.89", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 84, "status": "-" }, { "accession": "GCF_001729765.1", "gtdb_species": "s__Enterobacter kobei", "ani": 87.6255, 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