# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_5	LOCUS_00050	sequence01:3503..4054(-)	partial			WP_002286745.1	dihydrolipoamide dehydrogenase	93.4	59.5	49.1
MGA_36	LOCUS_00360	sequence01:33521..35407(-)	partial			WP_001044230.1	acyltransferase family protein	57.6	58.4	30.4
MGA_38	LOCUS_00380	sequence01:36589..37221(-)	partial			WP_015613384.1	membrane protein	92.4	65.2	28.2
MGA_72	LOCUS_00720	sequence01:70183..70359(-)	partial			WP_002356740.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_133	LOCUS_01330	sequence01:133214..134089(+)	partial			WP_011837300.1	helix-turn-helix transcriptional regulator	20.6	30.5	43.3
MGA_165	LOCUS_01650	sequence01:161421..161930(+)	partial			WP_003564519.1	TetR/AcrR family transcriptional regulator	72.8	63.4	33.3
MGA_189	LOCUS_01890	sequence01:186075..187247(+)	frameshift		185967	WP_000969590.1	Y-family DNA polymerase	95.6	83.2	52.0
MGA_201	LOCUS_02010	sequence01:193393..193743(-)	partial			WP_010714092.1	hypothetical protein	70.7	66.1	54.9
MGA_206	LOCUS_02060	sequence01:198371..204871(-)	partial			WP_010989949.1	tape measure protein	31.2	40.2	33.6
MGA_317	LOCUS_03170	sequence02:87249..87674(-)	partial			WP_005461900.1	GNAT family N-acetyltransferase	67.4	67.9	41.1
MGA_340	LOCUS_03400	sequence02:111023..112708(-)	partial			WP_011674154.1	DUF5011 domain-containing protein	70.4	68.2	27.3
MGA_352	LOCUS_03520	sequence02:123635..124354(-)	partial			WP_003234841.1	transcriptional regulator GamR	58.2	57.9	36.0
MGA_354	LOCUS_03540	sequence02:125976..126905(-)	partial			WP_011015684.1	serine hydrolase	64.1	70.8	32.0
MGA_355	LOCUS_03550	sequence02:126934..127866(-)	partial			WP_002397245.1	hypothetical protein	68.7	80.8	53.7
MGA_379	LOCUS_03790	sequence02:154058..154411(-)	internal_stop_codon	154424..154426(-)		WP_002338481.1	sugar transferase	100.0	51.1	70.9
MGA_380	LOCUS_03800	sequence02:154424..154774(-)	internal_stop_codon	154424..154426(-)		WP_002338481.1	sugar transferase	84.5	42.8	48.0
MGA_387	LOCUS_03870	sequence02:159883..160374(-)	partial			WP_012257362.1	acyltransferase	71.2	59.4	45.7
MGA_403	LOCUS_04030	sequence02:173705..174700(-)	partial			WP_010773717.1	TPM domain-containing protein	78.2	43.0	29.5
MGA_406	LOCUS_04060	sequence02:177263..177592(-)	partial			WP_009909989.1	Spx/MgsR family RNA polymerase-binding regulatory protein	80.7	66.2	62.5
MGA_417	LOCUS_04170	sequence02:191061..191933(-)	partial			WP_011674628.1	LysM peptidoglycan-binding domain-containing protein	43.1	9.6	33.8
MGA_437	LOCUS_04370	sequence03:15431..17494(+)	frameshift		17467	WP_012099512.1	hypothetical protein	40.2	64.7	29.2
MGA_500	LOCUS_05000	sequence03:68720..69187(+)	internal_stop_codon	68684..68686(+)		WP_001247875.1	DUF6434 domain-containing protein	91.0	78.2	44.1
MGA_525	LOCUS_05250	sequence03:99365..99667(+)	partial			WP_011101223.1	helix-turn-helix domain-containing protein	64.0	35.0	53.1
MGA_527	LOCUS_05270	sequence03:99888..100904(-)	partial			WP_011674729.1	sortase	60.9	68.8	36.4
MGA_549	LOCUS_05490	sequence03:131064..131432(+)	partial			WP_002294182.1	preprotein translocase subunit YajC	70.5	68.3	61.6
MGA_550	LOCUS_05500	sequence03:131697..133289(+)	partial			WP_010989363.1	LPXTG cell wall anchor domain-containing protein	19.2	13.0	41.0
MGA_577	LOCUS_05770	sequence03:161034..161462(+)	frameshift		161432	WP_010714143.1	Rha family transcriptional regulator	93.0	59.7	60.6
MGA_578	LOCUS_05780	sequence03:161404..161706(+)	frameshift		161432	WP_010714143.1	Rha family transcriptional regulator	86.0	38.9	61.6
MGA_604	LOCUS_06040	sequence03:182731..186216(+)	partial			WP_010989982.1	lmo2396 family class 1 internalin	39.2	47.4	34.1
MGA_605	LOCUS_06050	sequence03:186262..186678(-)	partial			WP_053996044.1	LytTR family DNA-binding domain-containing protein	84.8	46.2	32.2
MGA_623	LOCUS_06230	sequence04:10111..10332(-)	partial			WP_003434293.1	multidrug efflux MFS transporter Cme	76.7	13.5	69.6
MGA_667	LOCUS_06670	sequence04:54597..55280(-)	partial			WP_002287463.1	glycoside hydrolase family 73 protein	56.4	29.9	49.2
MGA_668	LOCUS_06680	sequence04:55235..55711(-)	frameshift		55285	WP_011254561.1	C40 family peptidase	34.8	29.9	52.7
MGA_669	LOCUS_06690	sequence04:56109..56468(+)	partial			WP_012774870.1	LytTR family DNA-binding domain-containing protein	72.3	77.3	36.0
MGA_690	LOCUS_06900	sequence04:73611..74300(-)	partial			WP_003722751.1	class A sortase	70.3	73.9	39.6
MGA_693	LOCUS_06930	sequence04:76264..77043(-)	partial			WP_002386238.1	WxL domain-containing protein	73.0	73.3	60.0
MGA_696	LOCUS_06960	sequence04:78173..80821(-)	partial			WP_003642999.1	WxL domain-containing protein	84.4	66.8	26.7
MGA_697	LOCUS_06970	sequence04:81624..83321(+)	partial			WP_008765058.1	ammonium transporter	66.5	79.6	56.7
MGA_710	LOCUS_07100	sequence04:97447..97980(-)	internal_stop_codon	98002..98004(-)		WP_009924988.1	UDP-glucose 4-epimerase GalE	97.7	54.1	50.8
MGA_711	LOCUS_07110	sequence04:98002..98430(-)	internal_stop_codon	98002..98004(-)		WP_010706835.1	UDP-glucose 4-epimerase GalE	100.0	43.0	64.8
MGA_730	LOCUS_07300	sequence04:119498..119863(-)	frameshift		119934	WP_011101945.1	NAD(P)H-binding protein	96.7	59.1	59.0
MGA_731	LOCUS_07310	sequence04:119932..120096(-)	frameshift		119937	WP_011102061.1	NAD(P)H-binding protein	94.4	25.5	52.9
MGA_738	LOCUS_07380	sequence04:126637..127200(-)	partial			WP_011476320.1	isoprenylcysteine carboxylmethyltransferase family protein	55.6	59.9	33.0
MGA_756	LOCUS_07560	sequence04:148038..148478(-)	partial			WP_002356030.1	mannose/fructose/sorbose PTS transporter subunit IIA	86.3	39.1	34.6
MGA_766	LOCUS_07660	sequence04:158742..159554(-)	partial			WP_011460552.1	energy-coupling factor transporter ATPase	91.1	41.5	38.2
MGA_773	LOCUS_07730	sequence05:1279..8178(+)	partial			WP_000516926.1	VaFE repeat-containing surface-anchored protein	39.2	80.6	30.5
MGA_775	LOCUS_07750	sequence05:9487..10836(+)	partial			WP_002287386.1	NlpC/P60 family protein	51.0	44.1	49.8
MGA_789	LOCUS_07890	sequence05:23695..23871(+)	frameshift		23868	WP_011101591.1	phosphopyruvate hydratase	91.4	12.4	90.6
MGA_790	LOCUS_07900	sequence05:23871..24248(+)	frameshift,internal_stop_codon	24247..24249(+)	23868	WP_003131198.1	phosphopyruvate hydratase	98.4	29.1	84.6
MGA_791	LOCUS_07910	sequence05:24351..24965(+)	internal_stop_codon	24246..24248(+)		WP_003131198.1	phosphopyruvate hydratase	98.5	47.6	75.1
MGA_805	LOCUS_08050	sequence05:38672..42076(+)	partial			WP_162225034.1	SpaA isopeptide-forming pilin-related protein	46.6	30.2	27.1
MGA_806	LOCUS_08060	sequence05:42073..43632(+)	partial			WP_002286776.1	pilin N-terminal domain-containing protein	66.3	83.8	30.4
MGA_826	LOCUS_08260	sequence05:59466..63953(+)	frameshift		63872,63881	WP_010989916.1	collagen binding domain-containing protein	92.2	83.8	38.4
MGA_827	LOCUS_08270	sequence05:63859..64290(+)	frameshift		63881	WP_162225034.1	SpaA isopeptide-forming pilin-related protein	91.6	8.8	36.6
MGA_853	LOCUS_08530	sequence05:90118..91443(+)	partial			WP_011836696.1	DUF1958 domain-containing protein	75.5	73.8	58.3
MGA_866	LOCUS_08660	sequence05:103748..104626(+)	frameshift,internal_stop_codon	104624..104626(+)	104680	WP_002287080.1	hypothetical protein	84.6	57.9	35.9
MGA_895	LOCUS_08950	sequence05:136211..136417(+)	partial			WP_002291570.1	hypothetical protein	70.6	81.4	47.9
MGA_991	LOCUS_09900	sequence06:72978..75179(+)	partial			WP_010905876.1	MucBP domain-containing protein	59.5	66.6	47.9
MGA_1015	LOCUS_10140	sequence06:94203..94634(-)	partial			WP_010922676.1	BglG family transcription antiterminator	89.5	19.5	39.6
MGA_1028	LOCUS_10270	sequence06:107411..109363(-)	partial			WP_011109597.1	Ig-like domain-containing protein	66.0	24.8	30.9
MGA_1039	LOCUS_10380	sequence06:120736..121446(+)	partial			WP_004454245.1	ABC transporter ATP-binding protein	98.3	74.6	38.6
MGA_1041	LOCUS_10400	sequence06:122296..122763(+)	internal_stop_codon	122761..122763(+)		WP_000822489.1	response regulator transcription factor	80.6	53.9	58.4
MGA_1042	LOCUS_10410	sequence06:122806..122991(+)	internal_stop_codon	122761..122763(+)		WP_011860731.1	response regulator transcription factor	93.4	24.9	51.7
MGA_1043	LOCUS_10420	sequence06:122988..124442(+)	partial			WP_000023851.1	HAMP domain-containing sensor histidine kinase	57.9	58.5	30.7
MGA_1044	LOCUS_10430	sequence06:124708..126303(-)	partial			WP_002287386.1	NlpC/P60 family protein	21.8	22.1	73.3
MGA_1064	LOCUS_10630	sequence06:144636..145103(-)	frameshift		145291	WP_011948434.1	DUF5131 family protein	96.8	63.8	66.7
MGA_1066	LOCUS_10650	sequence06:145800..146720(+)	partial			WP_011101137.1	DNA/RNA non-specific endonuclease	68.3	64.0	58.4
MGA_1074	LOCUS_10730	sequence07:83..634(+)	partial			WP_011476039.1	restriction endonuclease subunit S	99.5	48.9	63.7
MGA_1076	LOCUS_10750	sequence07:1666..2292(-)	frameshift,internal_stop_codon	1978..1980(-)	1953,1983	WP_010905481.1	restriction endonuclease subunit S	100.0	48.4	30.1
MGA_1077	LOCUS_10760	sequence07:2412..2792(-)	frameshift,internal_stop_codon	2412..2414(-)	2405	WP_011101216.1	restriction endonuclease subunit S	95.2	31.1	52.5
MGA_1089	LOCUS_10880	sequence07:18730..19221(-)	frameshift		19303	WP_000444271.1	AraC family transcriptional regulator	92.6	51.0	40.8
MGA_1090	LOCUS_10890	sequence07:19259..19633(-)	frameshift		19303	WP_003434289.1	GyrI-like domain-containing protein	88.7	36.6	47.3
MGA_1093	LOCUS_10920	sequence07:21688..22392(-)	frameshift		21708	WP_011948486.1	ABC transporter ATP-binding protein	97.4	74.5	53.5
MGA_1102	LOCUS_11010	sequence07:29700..30668(+)	partial			WP_152967683.1	sialidase family protein	36.3	63.8	32.5
MGA_1106	LOCUS_11050	sequence07:33480..36365(-)	partial			WP_011674154.1	DUF5011 domain-containing protein	26.4	49.6	34.5
MGA_1116	LOCUS_11150	sequence07:44915..45955(-)	partial			WP_048060762.1	glycosyltransferase family 4 protein	70.8	66.2	26.4
MGA_1121	LOCUS_11200	sequence07:51122..52204(+)	partial			WP_000883425.1	YhgE/Pip domain-containing protein	60.6	28.2	30.1
MGA_1128	LOCUS_11270	sequence07:58860..59360(-)	frameshift		59416	WP_002356327.1	DUF805 domain-containing protein	90.4	75.9	34.2
MGA_1140	LOCUS_11390	sequence07:64387..66684(-)	partial			WP_006037763.1	RHS repeat-associated core domain-containing protein	51.4	20.1	27.4
MGA_1177	LOCUS_11760	sequence07:105936..108866(-)	partial			WP_010758311.1	WxL domain-containing protein	63.5	79.3	47.9
MGA_1180	LOCUS_11790	sequence07:110405..111082(-)	partial			WP_010758311.1	WxL domain-containing protein	77.8	23.0	28.6
MGA_1228	LOCUS_12250	sequence08:8208..8528(-)	partial			WP_005477765.1	GFA family protein	74.5	58.3	46.8
MGA_1292	LOCUS_12890	sequence08:78088..78789(-)	partial			WP_010905524.1	MarR family transcriptional regulator	84.1	73.2	30.6
MGA_1304	LOCUS_13010	sequence08:89747..90553(-)	partial			WP_014626156.1	DUF3100 domain-containing protein	90.3	54.4	42.3
MGA_1305	LOCUS_13020	sequence08:90550..91818(-)	partial			WP_066054433.1	M20 family metallopeptidase	73.5	70.8	25.7
MGA_1331	LOCUS_13280	sequence08:119142..119957(-)	partial			WP_013530309.1	sugar phosphate isomerase/epimerase	65.7	61.9	29.0
MGA_1365	LOCUS_13620	sequence09:3426..4334(+)	frameshift		3426	WP_010964711.1	acyltransferase family protein	98.7	81.7	29.8
MGA_1369	LOCUS_13660	sequence09:6879..7868(+)	partial			WP_000362087.1	glycosyltransferase family 2 protein	68.7	72.0	35.9
MGA_1374	LOCUS_13710	sequence09:11101..12297(+)	partial			WP_002485939.1	bifunctional glycosyltransferase family 2 protein/CDP-glycerol:glycerophosphate glycerophosphotransferase	90.5	50.6	29.3
MGA_1375	LOCUS_13720	sequence09:12369..13205(+)	partial			WP_161799666.1	capsular polysaccharide synthesis protein	78.8	70.3	36.9
MGA_1444	LOCUS_14410	sequence09:79605..80012(+)	partial			WP_002294107.1	hypothetical protein	99.3	74.8	26.9
MGA_1459	LOCUS_14560	sequence09:89867..90166(+)	frameshift		90160	WP_002387211.1	FAD/NAD(P)-binding protein	83.8	15.2	48.4
MGA_1460	LOCUS_14570	sequence09:90265..91638(+)	frameshift,internal_stop_codon	90140..90142(+)	90127	WP_011674013.1	FAD/NAD(P)-binding protein	97.2	73.6	34.7
MGA_1520	LOCUS_15170	sequence10:111..1145(+)	partial			WP_012972458.1	tail fiber protein	30.2	27.2	60.6
MGA_1524	LOCUS_15210	sequence10:1948..2961(+)	partial			WP_000236381.1	peptidoglycan amidohydrolase family protein	42.1	58.6	45.8
MGA_1538	LOCUS_15350	sequence10:17721..18356(+)	partial			WP_013095892.1	multidrug efflux transporter transcriptional repressor AcrR	51.2	51.2	32.4
MGA_1547	LOCUS_15440	sequence10:26249..27016(-)	partial			WP_003549513.1	hypothetical protein	98.8	69.0	36.6
MGA_1563	LOCUS_15600	sequence10:45108..46151(+)	partial			WP_000339133.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	50.1	38.2	44.4
MGA_1583	LOCUS_15800	sequence10:66723..67106(+)	frameshift		66675	WP_003246343.1	6-phospho-3-hexuloisomerase	98.4	68.1	44.4
MGA_1605	LOCUS_16020	sequence10:88199..88324(-)	internal_stop_codon	88199..88201(-)		WP_002379347.1	NADH peroxidase	97.6	8.9	85.0
MGA_1612	LOCUS_16090	sequence10:93373..94053(-)	partial			WP_002389978.1	DUF4767 domain-containing protein	93.4	61.2	37.0
MGA_1645	LOCUS_16420	sequence10:128028..128759(+)	partial			WP_010972170.1	phosphodiesterase	66.7	58.1	30.2
MGA_1659	LOCUS_16560	sequence10:143118..143966(+)	partial			WP_003234958.1	RNA polymerase sigma factor SigW	26.2	39.6	44.6
MGA_1665	LOCUS_16620	sequence11:5593..5970(+)	partial			WP_003721901.1	mannose/fructose/sorbose PTS transporter subunit IIA	81.6	71.5	38.1
MGA_1730	LOCUS_17270	sequence11:67331..69052(+)	frameshift		67334	WP_011986653.1	BglG family transcription antiterminator	98.8	79.8	26.4
MGA_1759	LOCUS_17560	sequence11:94559..95566(-)	partial			WP_004399048.1	endonuclease YokF	50.7	58.4	41.5
MGA_1772	LOCUS_17690	sequence11:107846..108670(+)	partial			WP_011101598.1	hypothetical protein	93.1	46.9	32.1
MGA_1807	LOCUS_18030	sequence12:5502..7883(-)	partial			WP_011101918.1	bacterial Ig-like domain-containing protein	76.0	60.4	30.6
MGA_1817	LOCUS_18130	sequence12:19860..20822(+)	partial			WP_011392719.1	PocR ligand-binding domain-containing protein	32.8	24.3	32.7
MGA_1861	LOCUS_18570	sequence12:73819..75300(-)	partial			WP_010989475.1	PucR family transcriptional regulator	41.6	39.0	35.7
MGA_1868	LOCUS_18630	sequence12:79717..80022(-)	partial			WP_003422102.1	CBO2463/CBO2479 domain-containing protein	72.3	77.7	63.0
MGA_1890	LOCUS_18850	sequence12:105439..106311(-)	partial			WP_012775167.1	cation diffusion facilitator family transporter	99.7	70.1	53.6
MGA_1978	LOCUS_19720	sequence13:64090..64665(-)	partial			WP_003721557.1	BMC domain-containing protein	51.8	68.3	43.4
MGA_2157	LOCUS_21510	sequence14:121198..121794(-)	partial			WP_002373191.1	ankyrin repeat domain-containing protein	99.5	73.8	59.9
MGA_2200	LOCUS_21940	sequence15:45540..45866(-)	frameshift		45882	WP_003234873.1	DMT family transporter	88.9	31.4	53.1
MGA_2201	LOCUS_21950	sequence15:45844..46440(-)	frameshift		45888	WP_003234873.1	DMT family transporter	90.4	59.2	48.1
MGA_2227	LOCUS_22210	sequence15:73148..74521(-)	partial			WP_002383753.1	DUF5776 domain-containing protein	71.1	39.0	39.0
MGA_2283	LOCUS_22770	sequence16:15377..16090(-)	partial			WP_002286051.1	MurR/RpiR family transcriptional regulator	75.1	70.1	24.3
MGA_2302	LOCUS_22960	sequence16:37524..37970(+)	partial			WP_009903255.1	BglG family transcription antiterminator	95.9	22.2	43.7
MGA_2309	LOCUS_23030	sequence16:41197..41676(+)	partial			WP_013226947.1	cysteine hydrolase family protein	76.1	68.6	30.2
MGA_2350	LOCUS_23420	sequence16:86846..87394(+)	partial			WP_000026576.1	hypothetical protein	41.8	79.2	44.7
MGA_2373	LOCUS_23650	sequence17:4379..4591(-)	partial			WP_003562727.1	PLD nuclease N-terminal domain-containing protein	70.0	69.0	69.4
MGA_2380	LOCUS_23720	sequence17:9762..10757(-)	partial			WP_011948771.1	ABC transporter ATP-binding protein	73.4	73.5	44.6
MGA_2385	LOCUS_23770	sequence17:14379..14738(-)	frameshift		14381	WP_011986923.1	(Fe-S)-binding protein	82.4	26.8	44.1
MGA_2386	LOCUS_23780	sequence17:15114..16145(-)	partial			WP_013097038.1	sulfurtransferase	74.9	58.4	42.7
MGA_2470	LOCUS_24620	sequence17:103620..104201(-)	partial			WP_005810368.1	MarR family transcriptional regulator	73.1	70.0	45.8
MGA_2544	LOCUS_25360	sequence18:73388..74752(-)	partial			WP_011109597.1	Ig-like domain-containing protein	60.8	17.5	27.8
MGA_2551	LOCUS_25430	sequence18:80119..80796(+)	partial			WP_003974890.1	M23 family metallopeptidase	84.9	67.4	33.5
MGA_2555	LOCUS_25470	sequence18:82988..83437(-)	partial			WP_003640318.1	LytTR family DNA-binding domain-containing protein	67.1	65.6	37.0
MGA_2585	LOCUS_25770	sequence19:16887..17804(+)	partial			WP_002262049.1	DUF975 family protein	53.4	66.1	34.1
MGA_2592	LOCUS_25840	sequence19:23495..24313(-)	partial			WP_000249040.1	efflux RND transporter periplasmic adaptor subunit	78.7	56.7	27.0
MGA_2647	LOCUS_26390	sequence19:78651..79682(+)	internal_stop_codon	79680..79682(+)		WP_014208070.1	DUF4435 domain-containing protein	45.8	29.9	38.0
MGA_2650	LOCUS_26420	sequence19:81025..82395(+)	internal_stop_codon	82393..82395(+)		WP_198480299.1	ATP-dependent DNA helicase	89.0	48.9	23.3
MGA_2651	LOCUS_26430	sequence19:82603..83298(+)	partial			WP_198480299.1	ATP-dependent DNA helicase	35.1	10.1	37.3
MGA_2652	LOCUS_26440	sequence19:83448..85340(-)	frameshift,internal_stop_codon	85327..85329(-),85369..85371(-)	85308,85479	WP_091102695.1	AAA family ATPase	96.7	83.2	34.6
MGA_2658	LOCUS_26500	sequence19:88940..89575(+)	partial			WP_011085042.1	TetR/AcrR family transcriptional regulator	79.6	69.7	27.4
MGA_2659	LOCUS_26510	sequence19:89633..91648(-)	partial			WP_010990081.1	class 1 internalin InlJ	54.4	43.6	40.2
MGA_2661	LOCUS_26530	sequence20:423..722(+)	partial			WP_005816675.1	IS200/IS605-like element ISDha13 family transposase	91.9	60.3	86.8
MGA_2662	LOCUS_26540	sequence20:897..1319(-)	frameshift		1335	WP_011861240.1	lactate utilization protein	100.0	65.1	40.7
MGA_2672	LOCUS_26640	sequence20:8976..9635(+)	partial			WP_002355000.1	peptidase C39 family protein	74.9	64.0	42.8
MGA_2709	LOCUS_27010	sequence20:45000..45413(-)	partial			WP_002356030.1	mannose/fructose/sorbose PTS transporter subunit IIA	85.4	35.8	39.5
MGA_2755	LOCUS_27470	sequence21:92..397(-)	frameshift		410	WP_002680043.1	DMT family transporter	97.0	33.4	37.4
MGA_2756	LOCUS_27480	sequence21:1063..1530(-)	partial			WP_011837379.1	PTS transporter subunit IIBC	96.1	20.0	46.3
MGA_2762	LOCUS_27540	sequence21:7822..8916(-)	partial			WP_003549513.1	hypothetical protein	81.0	74.9	36.4
MGA_2820	LOCUS_28120	sequence21:69498..69722(+)	frameshift,internal_stop_codon	69479..69481(+),69413..69415(+),69410..69412(+),69434..69436(+)	69466,69358	WP_002287688.1	tyrosine-type recombinase/integrase	78.4	15.3	79.3
MGA_2821	LOCUS_28130	sequence21:69952..73404(-)	partial			WP_011391500.1	hypothetical protein	58.8	44.1	26.5
MGA_2829	LOCUS_28210	sequence21:78662..79336(-)	partial			WP_000284571.1	IS1182-like element IS1182 family transposase	99.1	41.6	100.0
MGA_2838	LOCUS_28290	sequence22:6822..10976(+)	partial			WP_010990018.1	SpaA isopeptide-forming pilin-related protein	82.1	69.0	22.7
MGA_2852	LOCUS_28430	sequence22:29335..32601(+)	partial			WP_010906283.1	SpaA isopeptide-forming pilin-related protein	89.3	64.5	25.1
MGA_2856	LOCUS_28470	sequence22:38906..42775(+)	partial			WP_164691239.1	SpaA isopeptide-forming pilin-related protein	30.7	11.0	24.7
MGA_2862	LOCUS_28530	sequence22:47108..47341(-)	partial			WP_003564501.1	YxeA family protein	81.8	53.4	42.9
MGA_2876	LOCUS_28670	sequence22:58813..62049(+)	partial			WP_154080969.1	endocarditis and biofilm-associated pilus tip protein EbpA	73.2	66.6	26.9
MGA_2877	LOCUS_28680	sequence22:62624..64117(+)	partial			WP_001245188.1	M protein trans-acting positive regulator PRD domain-containing protein	43.7	43.5	25.2
MGA_2883	LOCUS_28740	sequence22:68375..69529(+)	partial			WP_010918560.1	DUF3089 domain-containing protein	62.8	60.7	28.2
MGA_2898	LOCUS_28890	sequence23:6076..7020(-)	partial			WP_001833032.1	Stk1 family PASTA domain-containing Ser/Thr kinase	68.8	31.8	25.9
MGA_2914	LOCUS_29050	sequence23:18246..20936(-)	partial			WP_011674628.1	LysM peptidoglycan-binding domain-containing protein	75.7	52.4	26.3
MGA_2921	LOCUS_29120	sequence23:25563..26951(+)	partial			WP_003244531.1	beta-glucanase	19.3	37.6	40.4
MGA_2938	LOCUS_29290	sequence23:45299..45574(-)	internal_stop_codon	45584..45586(-)		WP_005308861.1	Crp/Fnr family transcriptional regulator	75.8	36.7	43.5
MGA_2959	LOCUS_29500	sequence24:5129..5515(+)	partial			WP_000776536.1	PTS ascorbate transporter subunit IIA	83.6	70.1	30.6
MGA_2960	LOCUS_29510	sequence24:5542..6000(+)	partial			WP_003733191.1	PTS sugar transporter subunit IIA	70.4	69.0	41.1
MGA_2986	LOCUS_29770	sequence24:30204..31544(+)	partial			WP_011861937.1	ribosome small subunit-dependent GTPase A	64.3	82.4	50.3
MGA_2988	LOCUS_29790	sequence24:31762..31995(-)	internal_stop_codon	31762..31764(-)		WP_001178565.1	Lrp/AsnC family transcriptional regulator	100.0	52.7	51.9
MGA_2989	LOCUS_29800	sequence24:32303..32725(+)	frameshift,internal_stop_codon	32284..32286(+)	32208,32172	WP_003398109.1	DJ-1/PfpI family protein	96.4	69.6	55.6
MGA_2996	LOCUS_29870	sequence24:37796..38143(+)	frameshift		38180,38095	WP_002895510.1	TraX family protein	92.2	40.3	52.8
MGA_2997	LOCUS_29880	sequence24:38853..39452(+)	partial			WP_002295919.1	PepSY domain-containing protein	79.4	73.5	53.8
MGA_3004	LOCUS_29950	sequence24:46100..47008(+)	partial			WP_000719220.1	aminopeptidase AmpS	70.5	42.9	34.4
MGA_3010	LOCUS_30010	sequence24:53070..53375(-)	internal_stop_codon	53412..53414(-)		WP_011861121.1	hypothetical protein	100.0	68.0	36.6
MGA_3022	LOCUS_30130	sequence25:4007..7546(-)	partial			WP_010819087.1	hypothetical protein	86.2	67.3	29.3
MGA_3023	LOCUS_30140	sequence25:7927..8211(+)	partial			WP_002357068.1	hypothetical protein	80.9	69.1	31.6
MGA_3047	LOCUS_30380	sequence25:31485..31733(-)	internal_stop_codon	31770..31772(-)		WP_010774219.1	GNAT family N-acetyltransferase	96.3	44.4	55.7
MGA_3048	LOCUS_30390	sequence25:31770..31991(-)	internal_stop_codon	31770..31772(-)		WP_010774219.1	GNAT family N-acetyltransferase	100.0	41.0	56.2
MGA_3068	LOCUS_30590	sequence26:1..559(+)	partial			WP_002296623.1	ISL3 family transposase	79.5	34.1	52.4
MGA_3077	LOCUS_30680	sequence26:10884..11744(-)	partial			WP_011836324.1	LysM domain-containing protein	31.8	24.9	40.4
MGA_3089	LOCUS_30800	sequence26:22153..22980(-)	internal_stop_codon	22981..22983(-)		WP_057757224.1	PTS system mannose/fructose/sorbose family transporter subunit IID	98.9	47.8	48.9
MGA_3090	LOCUS_30810	sequence26:22981..23739(-)	partial			WP_057757224.1	PTS system mannose/fructose/sorbose family transporter subunit IID	99.6	44.6	51.4
MGA_3115	LOCUS_31060	sequence26:49190..50800(-)	partial			WP_011674709.1	C39 family peptidase	52.8	68.8	33.7
MGA_3177	LOCUS_31650	sequence27:51298..52233(-)	partial			WP_001028144.1	aminoglycoside O-phosphotransferase APH(2'')-Ia	95.5	57.8	28.3
MGA_3178	LOCUS_31660	sequence27:52202..53059(-)	partial			WP_201627801.1	DMT family transporter	36.1	35.4	35.0
MGA_3182	LOCUS_31690	sequence28:2181..2855(+)	partial			WP_002296472.1	WxL domain-containing protein	74.6	73.0	53.8
MGA_3195	LOCUS_31820	sequence28:16412..17176(+)	partial			WP_011263897.1	ABC transporter ATP-binding protein	96.1	72.6	44.3
MGA_3200	LOCUS_31870	sequence28:22586..24841(+)	partial			WP_002382428.1	amidase domain-containing protein	74.2	83.9	44.4
MGA_3201	LOCUS_31880	sequence28:24858..25424(+)	partial			WP_002402964.1	signal peptidase I	75.5	59.8	38.9
MGA_3205	LOCUS_31920	sequence28:27983..28462(+)	partial			WP_037393272.1	Rrf2 family transcriptional regulator	48.4	47.5	40.3
MGA_3206	LOCUS_31930	sequence28:28602..28976(+)	partial			WP_010905604.1	YhgE/Pip domain-containing protein	94.4	16.5	35.1
MGA_3207	LOCUS_31940	sequence28:29001..29654(+)	partial			WP_010922784.1	YhgE/Pip domain-containing protein	86.2	24.6	34.2
MGA_3211	LOCUS_31980	sequence28:31449..31979(+)	partial			WP_002262616.1	helix-turn-helix transcriptional regulator	58.0	77.8	41.9
MGA_3266	LOCUS_32520	sequence29:38719..39192(-)	partial			WP_011107751.1	cyclophilin-like fold protein	96.8	45.2	31.8
MGA_3281	LOCUS_32670	sequence29:50171..50614(-)	partial			WP_081161075.1	helix-turn-helix domain-containing GNAT family N-acetyltransferase	89.8	42.3	29.5
MGA_3313	LOCUS_32980	sequence30:26055..26534(+)	partial			WP_010905440.1	Rrf2 family transcriptional regulator	59.7	60.9	40.0
MGA_3316	LOCUS_33010	sequence30:27891..29855(-)	partial			WP_010906283.1	SpaA isopeptide-forming pilin-related protein	76.6	33.4	26.7
MGA_3324	LOCUS_33090	sequence30:40330..41307(+)	partial			WP_005489357.1	AraC family transcriptional regulator	37.8	45.7	31.7
MGA_3329	LOCUS_33140	sequence31:931..2340(-)	partial			WP_002387667.1	CAP domain-containing protein	41.6	43.0	31.5
MGA_3350	LOCUS_33350	sequence31:23394..23606(+)	frameshift		23594	WP_002288830.1	PTS sugar transporter subunit IIB	98.6	69.7	98.6
MGA_3352	LOCUS_33370	sequence31:24351..25211(+)	frameshift		24313	WP_002292381.1	L-ribulose-5-phosphate 3-epimerase	99.7	56.9	83.5
MGA_3385	LOCUS_33700	sequence32:13060..13410(-)	partial			WP_010922041.1	PTS sugar transporter subunit IIA	92.2	74.5	33.9
MGA_3398	LOCUS_33830	sequence32:23878..28068(-)	partial			WP_011119870.1	choice-of-anchor Q domain-containing protein	55.2	25.4	28.1
MGA_3488	LOCUS_34720	sequence34:36577..37512(-)	frameshift		37504	WP_070090119.1	IS110 family transposase	94.9	72.1	42.3
MGA_3489	LOCUS_34730	sequence34:37493..37819(-)	frameshift		37507	WP_070090119.1	IS110 family transposase	95.4	24.5	46.6
MGA_3540	LOCUS_35230	sequence36:15557..16147(+)	partial			WP_000577672.1	helix-turn-helix transcriptional regulator	39.8	52.3	46.2
MGA_3544	LOCUS_35270	sequence36:19465..20436(-)	partial			WP_010774188.1	DUF4950 domain-containing protein	18.3	24.8	58.1
MGA_3547	LOCUS_35300	sequence36:22152..22808(-)	partial			WP_002399599.1	helix-turn-helix transcriptional regulator	32.1	58.0	49.3
MGA_3559	LOCUS_35420	sequence36:28217..28477(+)	partial			WP_003563873.1	transcriptional repressor LexA	84.9	35.1	39.7
MGA_3569	LOCUS_35520	sequence36:31647..31970(+)	partial			WP_000052302.1	hypothetical protein	72.0	64.5	40.3
MGA_3573	LOCUS_35550	sequence37:3193..4644(-)	partial			WP_010905846.1	helix-turn-helix domain-containing protein	35.0	33.8	26.0
MGA_3603	LOCUS_35850	sequence37:28831..29163(+)	partial			WP_000631264.1	Spx/MgsR family RNA polymerase-binding regulatory protein	87.3	70.1	54.2
MGA_3631	LOCUS_36130	sequence38:27200..27946(+)	partial			WP_002382321.1	3-dehydroquinate synthase	60.5	42.5	32.9
MGA_3632	LOCUS_36140	sequence38:27989..28975(-)	partial			WP_011726740.1	plasmid pRiA4b ORF-3 family protein	38.4	56.2	40.3
MGA_3659	LOCUS_36410	sequence40:3543..3935(+)	partial			WP_002286930.1	FtsK/SpoIIIE domain-containing protein	82.3	23.8	94.4
MGA_3661	LOCUS_36430	sequence40:5112..5252(+)	frameshift		5234	WP_002286933.1	hypothetical protein	63.0	34.5	89.7
MGA_3662	LOCUS_36440	sequence40:5252..5401(+)	frameshift		5234	WP_002286933.1	hypothetical protein	100.0	58.3	93.9
MGA_3665	LOCUS_36470	sequence40:7214..7489(+)	partial			WP_002288934.1	antirestriction protein ArdA	98.9	54.2	93.3
MGA_3666	LOCUS_36480	sequence40:7455..7643(+)	partial			WP_002288934.1	antirestriction protein ArdA	82.3	30.7	90.2
MGA_3678	LOCUS_36600	sequence40:20399..21517(-)	internal_stop_codon	21518..21520(-)		WP_002357746.1	MFS transporter	97.8	76.3	70.1
MGA_3679	LOCUS_36610	sequence40:21518..21838(-)	internal_stop_codon	21518..21520(-)		WP_002357746.1	MFS transporter	96.2	21.4	80.4
MGA_3681	LOCUS_36630	sequence40:22386..23057(-)	frameshift		22406	WP_002397195.1	AP2 domain-containing protein	79.4	77.7	34.8
MGA_3682	LOCUS_36640	sequence40:23406..24857(-)	partial			WP_002378718.1	glucosaminidase domain-containing protein	71.6	72.2	35.5
MGA_3684	LOCUS_36660	sequence40:26446..>27235(-)	partial			WP_011254524.1	Rib/alpha-like domain-containing protein	98.5	15.4	33.0
MGA_3685	LOCUS_36670	sequence41:119..742(-)	partial			WP_002369211.1	glycerophosphodiester phosphodiesterase	91.8	32.2	38.9
MGA_3728	LOCUS_37100	sequence42:23210..24088(+)	partial			WP_009930971.1	MFS transporter	95.5	70.5	44.3
MGA_3729	LOCUS_37110	sequence42:24069..24539(+)	partial			WP_011674709.1	C39 family peptidase	100.0	35.8	48.1
MGA_3746	LOCUS_37280	sequence43:12122..16762(+)	partial			WP_010905386.1	tape measure protein	51.9	64.5	21.6
MGA_3748	LOCUS_37300	sequence43:17143..19611(+)	partial			WP_010964431.1	hypothetical protein	18.4	73.8	32.5
MGA_3795	LOCUS_37760	sequence46:678..1256(-)	partial			WP_001984707.1	HAMP domain-containing sensor histidine kinase	94.8	43.5	40.7
MGA_3803	LOCUS_37840	sequence46:8021..8521(+)	partial			WP_002287463.1	glycoside hydrolase family 73 protein	79.5	29.9	56.8
MGA_3810	LOCUS_37910	sequence46:11431..12108(+)	partial			WP_010905391.1	peptidoglycan amidohydrolase family protein	71.1	56.8	43.5
MGA_3811	LOCUS_37920	sequence46:12130..12822(+)	partial			WP_002384367.1	phage tail spike protein	69.6	18.3	32.6
MGA_3831	LOCUS_38110	sequence47:4806..5255(+)	partial			WP_003722849.1	LytTR family DNA-binding domain-containing protein	68.5	67.5	43.1
MGA_3834	LOCUS_38140	sequence47:6674..7429(+)	partial			WP_005812720.1	ATP-binding cassette domain-containing protein	90.0	74.3	43.4
MGA_3845	LOCUS_38250	sequence48:84..806(-)	frameshift		112,1058,860	WP_014748779.1	IS256 family transposase	97.1	54.2	90.6
MGA_3846	LOCUS_38260	sequence48:859..984(-)	frameshift		1097,1187,862,1057	WP_002298157.1	IS256 family transposase	100.0	9.5	92.7
MGA_3847	LOCUS_38270	sequence48:1176..1334(-)	frameshift		1097,1187,1057	WP_014748779.1	IS256 family transposase	94.2	11.4	95.9
MGA_3849	LOCUS_38290	sequence48:2825..3994(-)	partial			WP_011202567.1	DUF262 domain-containing protein	64.0	61.1	30.2
MGA_3874	LOCUS_38530	sequence49:7820..8554(-)	partial			WP_011674462.1	IS3-like element ISLca1 family transposase	99.6	49.3	35.3
MGA_3875	LOCUS_38540	sequence49:8712..8846(+)	internal_stop_codon	8673..8675(+)		WP_002375743.1	6-phospho-beta-glucosidase	97.7	9.0	81.4
MGA_3879	LOCUS_38580	sequence49:11860..12960(+)	frameshift		11827	WP_003245781.1	PTS mannose transporter subunit IIABC	92.9	52.8	43.6
MGA_3895	LOCUS_38730	sequence50:10788..11528(+)	partial			WP_000577652.1	helix-turn-helix transcriptional regulator	41.9	69.1	39.8
MGA_3914	LOCUS_38900	sequence52:292..858(+)	frameshift,internal_stop_codon	857..859(+)	265	WP_002297218.1	ISL3-like element ISEfa11 family transposase	100.0	43.6	96.3
MGA_3915	LOCUS_38910	sequence52:919..1539(+)	internal_stop_codon	856..858(+)		WP_002297218.1	ISL3-like element ISEfa11 family transposase	100.0	47.8	98.5
MGA_3918	LOCUS_38940	sequence52:3801..4094(-)	partial			WP_025186461.1	GntR family transcriptional regulator	100.0	41.5	99.0
MGA_3927	LOCUS_39030	sequence52:13128..13430(+)	partial			WP_002298157.1	IS256 family transposase	99.0	23.0	99.0
MGA_3949	LOCUS_39240	sequence54:2011..3270(+)	partial			WP_002399809.1	ATP-binding protein	99.0	50.9	98.1
MGA_3951	LOCUS_39260	sequence54:5893..7065(+)	partial			WP_002399809.1	ATP-binding protein	100.0	47.9	96.7
MGA_3957	LOCUS_39310	sequence55:2538..3104(+)	partial			WP_010906130.1	DNA internalization-related competence protein ComEC/Rec2	94.1	25.1	46.8
MGA_3973	LOCUS_39460	sequence56:10394..10633(+)	partial			WP_002362972.1	MarR family transcriptional regulator	96.2	52.8	57.9
MGA_4002	LOCUS_39720	sequence62:3..626(+)	partial			WP_002387410.1	zinc ABC transporter substrate-binding protein AdcA	100.0	40.5	68.6
MGA_4004	LOCUS_39740	sequence62:1082..1645(-)	frameshift,internal_stop_codon	1138..1140(-),1726..1728(-),1129..1131(-)	1152,1803	WP_011674147.1	IS30 family transposase	88.2	50.3	49.7
MGA_4006	LOCUS_39760	sequence62:2265..3092(+)	frameshift		3077	WP_003234625.1	zinc metallochaperone ZinU	99.6	68.5	42.0
MGA_4007	LOCUS_39770	sequence62:3110..3688(+)	partial			WP_002358541.1	NusG domain II-containing protein	58.3	84.3	55.8
MGA_4011	LOCUS_39810	sequence63:2481..3317(-)	frameshift		3361	WP_099434174.1	IS3-like element ISEfa8 family transposase	100.0	71.8	99.3
MGA_4012	LOCUS_39820	sequence63:3353..3643(-)	frameshift		3361	WP_095007062.1	IS3-like element ISEfa8 family transposase	97.9	24.3	98.9
MGA_4023	LOCUS_39930	sequence67:91..273(-)	partial			WP_003433732.1	ABC transporter ATP-binding protein	75.0	15.5	57.8
MGA_4036	LOCUS_40030	sequence70:426..962(-)	frameshift,internal_stop_codon	578..580(-)	593,532	WP_002359858.1	winged helix-turn-helix domain-containing protein	69.1	50.4	48.0
MGA_4037	LOCUS_40040	sequence70:1550..1690(-)	partial			WP_002358603.1	ParB/RepB/Spo0J family partition protein	89.1	23.2	73.2
MGA_4040	LOCUS_40070	sequence72:61..744(+)	frameshift		717	WP_100190734.1	IS3 family transposase	99.1	43.1	38.9
MGA_4045	LOCUS_40080	sequence75:578..>1081(-)	partial			WP_141741171.1	IS3 family transposase	98.2	34.7	100.0