{
    "type": "genome",
    "identifier": "GCA_018377175.1",
    "organism": "Staphylococcus aureus",
    "title": "Staphylococcus aureus",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018377175.1",
        "bioproject": "PRJNA698986",
        "biosample": "SAMN17801320",
        "wgs_master": "JAGZZX000000000.1",
        "refseq_category": "na",
        "taxid": "1280",
        "species_taxid": "1280",
        "organism_name": "Staphylococcus aureus",
        "infraspecific_name": "",
        "isolate": "L3_063_000G1_dasL3_063_000G1_concoct_116_sub",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/16",
        "asm_name": "ASM1837717v1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/377/175/GCA_018377175.1_ASM1837717v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-16",
    "dateModified": "2021-05-16",
    "datePublished": "2021-05-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus aureus"
        ],
        "sample_taxid": [
            "1280"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Magee-Womens Hospital of UPMC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.733 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 92.47,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2596105",
        "Number of Sequences": "432",
        "Longest Sequences (bp)": "44570",
        "N50 (bp)": "9430",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.9",
        "Number of CDSs": "2157",
        "Average Protein Length": "282.7",
        "Coding Ratio (%)": "70.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Staphylococcus aureus",
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                "accession": "GCA_000330825.2",
                "taxid": 1280,
                "species_taxid": 1280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.787,
                "matched_fragments": 605,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus aureus",
                "strain": "strain=DSM 20231",
                "accession": "GCA_001027105.1",
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                "species_taxid": 1280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.766,
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                "total_fragments": 633,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus aureus",
                "strain": "strain=NBRC 100910",
                "accession": "GCA_001544175.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 97.7205,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus aureus",
                "strain": "strain=NCTC 08532",
                "accession": "GCA_002902205.1",
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                "species_taxid": 1280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.7154,
                "matched_fragments": 605,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus aureus",
                "strain": "strain=FDAARGOS_773",
                "accession": "GCA_006364675.1",
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                "species_taxid": 1280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.7056,
                "matched_fragments": 607,
                "total_fragments": 633,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus aureus",
                "strain": "strain=PartF-Saureus-RM8376",
                "accession": "GCA_022869625.1",
                "taxid": 1280,
                "species_taxid": 1280,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.6944,
                "matched_fragments": 610,
                "total_fragments": 633,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus taiwanensis",
                "strain": "strain=NTUH-S172",
                "accession": "GCA_020544305.1",
                "taxid": 2750012,
                "species_taxid": 2750012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1227,
                "matched_fragments": 229,
                "total_fragments": 633,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Macrococcus armenti",
                "strain": "strain=JEK37",
                "accession": "GCA_020097135.1",
                "taxid": 2875764,
                "species_taxid": 2875764,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.178,
                "matched_fragments": 67,
                "total_fragments": 633,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 92.47,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001027105.1",
                "gtdb_species": "s__Staphylococcus aureus",
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                "matched_fragments": 600,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.78",
                "min_intra_species_ani": "97.08",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 13059,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002902405.1",
                "gtdb_species": "s__Staphylococcus schweitzeri",
                "ani": 89.9815,
                "matched_fragments": 584,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_015025035.1",
                "gtdb_species": "s__Staphylococcus sp015025035",
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                "matched_fragments": 583,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.24",
                "min_intra_species_ani": "97.61",
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                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000236925.1",
                "gtdb_species": "s__Staphylococcus argenteus",
                "ani": 88.5524,
                "matched_fragments": 590,
                "total_fragments": 633,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "98.60",
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                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 171,
                "status": "-"
            },
            {
                "accession": "GCF_002902085.1",
                "gtdb_species": "s__Staphylococcus simiae",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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                "mean_intra_species_ani": "99.97",
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                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_017357005.1",
                "gtdb_species": "s__Staphylococcus simiae_A",
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                "matched_fragments": 381,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.91",
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                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_001224225.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
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                "mean_intra_species_ani": "98.37",
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                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 22,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.096,
        "cell_length": -0.096,
        "doubling_h": -0.137,
        "growth_tmp": 37.0,
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        "genome_size": 2854902.382,
        "gc_content": 32.768,
        "coding_genes": 2757.526,
        "rRNA16S_genes": 5.275,
        "tRNA_genes": 58.685,
        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacillota",
        "c__Bacilli",
        "o__Staphylococcales",
        "f__Staphylococcaceae",
        "g__Staphylococcus",
        "s__Staphylococcus aureus"
    ],
    "_genome_taxon": [
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        "aureus",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Staphylococcales",
        "f__Staphylococcaceae",
        "g__Staphylococcus",
        "s__Staphylococcus aureus",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Staphylococcales",
        "Staphylococcaceae",
        "Staphylococcus",
        "Staphylococcus",
        "aureus"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}