{ "type": "genome", "identifier": "GCA_018377355.1", "organism": "Veillonella sp.", "title": "Veillonella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018377355.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801311", "wgs_master": "JAGZZO000000000.1", "refseq_category": "na", "taxid": "1926307", "species_taxid": "1926307", "organism_name": "Veillonella sp.", "infraspecific_name": "", "isolate": "L3_060_043G1_dasL3_060_043G1_maxbin2.maxbin.008", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837735v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/377/355/GCA_018377355.1_ASM1837735v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Veillonella sp." ], "sample_taxid": [ "1926307" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "0.503 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1745789", "Number of Sequences": "463", "Longest Sequences (bp)": "34936", "N50 (bp)": "5148", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.1", "Number of CDSs": "1360", "Average Protein Length": "279.0", "Coding Ratio (%)": "65.2", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Veillonella atypica", "strain": "strain=ATCC 17744", "accession": "GCA_002959915.1", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 97.7011, "matched_fragments": 302, "total_fragments": 332, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella atypica", "strain": "strain=NCTC11830", "accession": "GCA_900460235.1", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 97.6843, "matched_fragments": 301, "total_fragments": 332, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella atypica", "strain": "strain=KON", "accession": "GCA_000318355.2", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 97.6505, "matched_fragments": 301, "total_fragments": 332, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella tobetsuensis", "strain": "strain=ATCC BAA-2400", "accession": "GCA_001078375.1", "taxid": 1110546, "species_taxid": 1110546, "relation_to_type": "type", "validated": true, "ani": 88.1192, "matched_fragments": 291, "total_fragments": 332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella dispar", "strain": "strain=ATCC 17748", "accession": "GCA_000160015.1", "taxid": 39778, "species_taxid": 39778, "relation_to_type": "suspected-type", "validated": true, "ani": 83.8551, "matched_fragments": 224, "total_fragments": 332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella infantium", "strain": "strain=T11011-4", "accession": "GCA_002959895.1", "taxid": 1911679, "species_taxid": 1911679, "relation_to_type": "type", "validated": true, "ani": 83.802, "matched_fragments": 229, "total_fragments": 332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella dispar", "strain": "strain=NCTC11831", "accession": "GCA_900637515.1", "taxid": 39778, "species_taxid": 39778, "relation_to_type": "suspected-type", "validated": true, "ani": 83.7532, "matched_fragments": 228, "total_fragments": 332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella rogosae", "strain": "strain=JCM 15642", "accession": "GCA_001312485.1", "taxid": 423477, "species_taxid": 423477, "relation_to_type": "type", "validated": true, "ani": 83.2267, "matched_fragments": 202, "total_fragments": 332, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella parvula", "strain": "strain=DSM 2008", "accession": "GCA_000024945.1", "taxid": 29466, "species_taxid": 29466, "relation_to_type": 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