{ "type": "genome", "identifier": "GCA_018377835.1", "organism": "Odoribacter splanchnicus", "title": "Odoribacter splanchnicus", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018377835.1", "bioproject": "PRJNA698986", "biosample": "SAMN17801287", "wgs_master": "JAGZYQ000000000.1", "refseq_category": "na", "taxid": "28118", "species_taxid": "28118", "organism_name": "Odoribacter splanchnicus", "infraspecific_name": "", "isolate": "L3_068_000M1_dasL3_068_000M1_concoct_31", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/16", "asm_name": "ASM1837783v1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/377/835/GCA_018377835.1_ASM1837783v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-16", "dateModified": "2021-05-16", "datePublished": "2021-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Odoribacter splanchnicus" ], "sample_taxid": [ "28118" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Pittsburgh, Magee-Womens Hospital of UPMC" ], "sample_host_location_id": [], "data_size": "1.107 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3875486", "Number of Sequences": "60", "Longest Sequences (bp)": "211671", "N50 (bp)": "91248", "Gap Ratio (%)": "0.000593", "GCcontent (%)": "43.3", "Number of CDSs": "3201", "Average Protein Length": "356.6", "Coding Ratio (%)": "88.3", "Number of rRNAs": "0", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Odoribacter splanchnicus", "strain": "strain=DSM 220712", "accession": "GCA_000190535.1", "taxid": 28118, "species_taxid": 28118, "relation_to_type": "type", "validated": true, "ani": 99.3278, "matched_fragments": 1181, "total_fragments": 1264, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Odoribacter splanchnicus", "strain": "strain=NCTC10825", "accession": "GCA_900187175.1", "taxid": 28118, "species_taxid": 28118, "relation_to_type": "type", "validated": true, "ani": 99.3262, "matched_fragments": 1182, 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"status": "below_threshold" }, { "organism_name": "Butyricimonas faecihominis", "strain": "strain=DSM 105721", "accession": "GCA_014196975.1", "taxid": 1472416, "species_taxid": 1472416, "relation_to_type": "type", "validated": true, "ani": 76.8114, "matched_fragments": 86, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyricimonas virosa", "strain": "strain=DSM 23226", "accession": "GCA_000519105.1", "taxid": 544645, "species_taxid": 544645, "relation_to_type": "type", "validated": true, "ani": 76.6544, "matched_fragments": 96, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyricimonas virosa", "strain": "strain=DSM 23226", "accession": "GCA_025148635.1", "taxid": 544645, "species_taxid": 544645, "relation_to_type": "type", "validated": true, "ani": 76.5888, "matched_fragments": 99, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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