{
    "type": "genome",
    "identifier": "GCA_018381075.1",
    "organism": "Rothia mucilaginosa",
    "title": "Rothia mucilaginosa",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018381075.1",
        "bioproject": "PRJNA698986",
        "biosample": "SAMN17801127",
        "wgs_master": "JAGZSM000000000.1",
        "refseq_category": "na",
        "taxid": "43675",
        "species_taxid": "43675",
        "organism_name": "Rothia mucilaginosa",
        "infraspecific_name": "",
        "isolate": "L2_038_092G1_dasL2_038_092G1_concoct_40",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/17",
        "asm_name": "ASM1838107v1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/075/GCA_018381075.1_ASM1838107v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-17",
    "dateModified": "2021-05-17",
    "datePublished": "2021-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rothia mucilaginosa"
        ],
        "sample_taxid": [
            "43675"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Magee-Womens Hospital of UPMC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.634 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2233101",
        "Number of Sequences": "57",
        "Longest Sequences (bp)": "602304",
        "N50 (bp)": "133069",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.5",
        "Number of CDSs": "1717",
        "Average Protein Length": "350.3",
        "Coding Ratio (%)": "80.8",
        "Number of rRNAs": "1",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rothia mucilaginosa",
                "strain": "strain=ATCC 25296",
                "accession": "GCA_000175615.1",
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                "species_taxid": 43675,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.5594,
                "matched_fragments": 677,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rothia aeria",
                "strain": "strain=FDAARGOS_1137",
                "accession": "GCA_016726365.1",
                "taxid": 172042,
                "species_taxid": 172042,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8163,
                "matched_fragments": 251,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=NCTC10917",
                "accession": "GCA_900455895.1",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.65,
                "matched_fragments": 203,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=ATCC 17931",
                "accession": "GCA_000164695.2",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6063,
                "matched_fragments": 207,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia terrae",
                "strain": "strain=LMG 23708",
                "accession": "GCA_012396615.1",
                "taxid": 396015,
                "species_taxid": 396015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.138,
                "matched_fragments": 123,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia aerolata",
                "strain": "strain=CCM 8669",
                "accession": "GCA_014635585.1",
                "taxid": 1812262,
                "species_taxid": 1812262,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0343,
                "matched_fragments": 182,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria dechangensis",
                "strain": "strain=CGMCC 1.12187",
                "accession": "GCA_014636775.1",
                "taxid": 1176249,
                "species_taxid": 1176249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1033,
                "matched_fragments": 129,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria palustris",
                "strain": "strain=TAGA27",
                "accession": "GCA_016907795.1",
                "taxid": 71999,
                "species_taxid": 71999,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9253,
                "matched_fragments": 102,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glutamicibacter mysorens",
                "strain": "strain=NBRC 103060",
                "accession": "GCA_001552115.1",
                "taxid": 257984,
                "species_taxid": 257984,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9237,
                "matched_fragments": 77,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria rhizophila",
                "strain": "strain=TA68",
                "accession": "GCA_003667225.1",
                "taxid": 72000,
                "species_taxid": 72000,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8617,
                "matched_fragments": 102,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micrococcus luteus",
                "strain": "strain=ATCC 4698",
                "accession": "GCA_003417425.1",
                "taxid": 1270,
                "species_taxid": 1270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5733,
                "matched_fragments": 67,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria soli",
                "strain": "strain=M5W7-7",
                "accession": "GCA_003797835.1",
                "taxid": 2485125,
                "species_taxid": 2485125,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5319,
                "matched_fragments": 90,
                "total_fragments": 713,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neomicrococcus aestuarii",
                "strain": "strain=DSM 105783",
                "accession": "GCA_014201135.1",
                "taxid": 556325,
                "species_taxid": 556325,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2544,
                "matched_fragments": 66,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia yuyongxinii",
                "strain": "strain=Z443",
                "accession": "GCA_006352065.1",
                "taxid": 2589797,
                "species_taxid": 2589797,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9379,
                "matched_fragments": 55,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
                "strain": "strain=ATCC 33566",
                "accession": "GCA_021922985.1",
                "taxid": 31965,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6581,
                "matched_fragments": 50,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
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                "accession": "GCA_002240635.1",
                "taxid": 31965,
                "species_taxid": 28447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6095,
                "matched_fragments": 50,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000175615.1",
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                "matched_fragments": 677,
                "total_fragments": 713,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.99",
                "min_intra_species_ani": "95.33",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 44,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001808955.1",
                "gtdb_species": "s__Rothia sp001808955",
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                "matched_fragments": 661,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.04",
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                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCA_015265375.1",
                "gtdb_species": "s__Rothia sp015265375",
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                "mean_intra_species_ani": "95.30",
                "min_intra_species_ani": "95.30",
                "mean_intra_species_af": "0.97",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_001548235.1",
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                "mean_intra_species_ani": "95.72",
                "min_intra_species_ani": "95.51",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_001061665.1",
                "gtdb_species": "s__Rothia mucilaginosa_A",
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                "matched_fragments": 624,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
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                "mean_intra_species_ani": "97.28",
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                "num_clustered_genomes": 10,
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            },
            {
                "accession": "GCF_901875305.1",
                "gtdb_species": "s__Rothia sp902373285",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
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                "mean_intra_species_ani": "97.53",
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                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 6,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.118,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 31.667,
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        "rRNA16S_genes": 3.0,
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        "sporulation": 0.0,
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        "range_salinity": null,
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        "bacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Actinomycetota",
        "c__Actinomycetes",
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        "f__Micrococcaceae",
        "g__Rothia",
        "s__Rothia mucilaginosa"
    ],
    "_genome_taxon": [
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        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Micrococcaceae",
        "g__Rothia",
        "s__Rothia mucilaginosa",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Micrococcaceae",
        "Rothia",
        "Rothia",
        "mucilaginosa"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}