{
    "type": "genome",
    "identifier": "GCA_018381565.1",
    "organism": "Veillonella sp.",
    "title": "Veillonella sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018381565.1",
        "bioproject": "PRJNA698986",
        "biosample": "SAMN17801106",
        "wgs_master": "JAGZRR000000000.1",
        "refseq_category": "na",
        "taxid": "1926307",
        "species_taxid": "1926307",
        "organism_name": "Veillonella sp.",
        "infraspecific_name": "",
        "isolate": "L2_022_031G1_dasL2_022_031G1_concoct_3",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/17",
        "asm_name": "ASM1838156v1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/381/565/GCA_018381565.1_ASM1838156v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-17",
    "dateModified": "2021-05-17",
    "datePublished": "2021-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Veillonella sp."
        ],
        "sample_taxid": [
            "1926307"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Magee-Womens Hospital of UPMC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.587 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2068731",
        "Number of Sequences": "30",
        "Longest Sequences (bp)": "390346",
        "N50 (bp)": "142282",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.4",
        "Number of CDSs": "1911",
        "Average Protein Length": "314.8",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Veillonella nakazawae",
                "strain": "strain=T1-7",
                "accession": "GCA_013393365.1",
                "taxid": 2682456,
                "species_taxid": 2682456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.2451,
                "matched_fragments": 594,
                "total_fragments": 673,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella dispar",
                "strain": "strain=NCTC11831",
                "accession": "GCA_900637515.1",
                "taxid": 39778,
                "species_taxid": 39778,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.0054,
                "matched_fragments": 597,
                "total_fragments": 673,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella dispar",
                "strain": "strain=ATCC 17748",
                "accession": "GCA_000160015.1",
                "taxid": 39778,
                "species_taxid": 39778,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 92.8713,
                "matched_fragments": 596,
                "total_fragments": 673,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella infantium",
                "strain": "strain=T11011-4",
                "accession": "GCA_002959895.1",
                "taxid": 1911679,
                "species_taxid": 1911679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.2761,
                "matched_fragments": 596,
                "total_fragments": 673,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella rogosae",
                "strain": "strain=JCM 15642",
                "accession": "GCA_002959775.1",
                "taxid": 423477,
                "species_taxid": 423477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.5421,
                "matched_fragments": 587,
                "total_fragments": 673,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella rogosae",
                "strain": "strain=JCM 15642",
                "accession": "GCA_001312485.1",
                "taxid": 423477,
                "species_taxid": 423477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.397,
                "matched_fragments": 568,
                "total_fragments": 673,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella parvula",
                "strain": "strain=DSM 2008",
                "accession": "GCA_000024945.1",
                "taxid": 29466,
                "species_taxid": 29466,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 86.8004,
                "matched_fragments": 556,
                "total_fragments": 673,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Veillonella parvula",
                "strain": "strain=NCTC11810",
                "accession": "GCA_900186885.1",
                "taxid": 29466,
                "species_taxid": 29466,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 86.7026,
                "matched_fragments": 567,
                "total_fragments": 673,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900550175.1",
                "gtdb_species": "s__Veillonella sp900550175",
                "ani": 97.7704,
                "matched_fragments": 458,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.03",
                "min_intra_species_ani": "98.03",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003463825.1",
                "gtdb_species": "s__Veillonella sp003463825",
                "ani": 93.0189,
                "matched_fragments": 548,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "95.41",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900637515.1",
                "gtdb_species": "s__Veillonella dispar",
                "ani": 93.0054,
                "matched_fragments": 597,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.54",
                "min_intra_species_ani": "95.48",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900545205.1",
                "gtdb_species": "s__Veillonella sp900545205",
                "ani": 92.8088,
                "matched_fragments": 497,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.54",
                "min_intra_species_ani": "95.18",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900552715.1",
                "gtdb_species": "s__Veillonella sp900552715",
                "ani": 92.7291,
                "matched_fragments": 483,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002959755.1",
                "gtdb_species": "s__Veillonella sp002959755",
                "ani": 92.6734,
                "matched_fragments": 591,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900549845.1",
                "gtdb_species": "s__Veillonella sp900549845",
                "ani": 92.6723,
                "matched_fragments": 410,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900538355.1",
                "gtdb_species": "s__Veillonella sp900538355",
                "ani": 92.6466,
                "matched_fragments": 569,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_905209685.1",
                "gtdb_species": "s__Veillonella sp905209685",
                "ani": 92.185,
                "matched_fragments": 453,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
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                "mean_intra_species_ani": "95.07",
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                "mean_intra_species_af": "0.78",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902834965.1",
                "gtdb_species": "s__Veillonella sp902834965",
                "ani": 91.8501,
                "matched_fragments": 288,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900765235.1",
                "gtdb_species": "s__Veillonella sp900765235",
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                "matched_fragments": 339,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002959775.1",
                "gtdb_species": "s__Veillonella rogosae",
                "ani": 89.5421,
                "matched_fragments": 587,
                "total_fragments": 673,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.92",
                "min_intra_species_ani": "95.91",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 12,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.353,
        "cell_length": -0.362,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.714,
        "optimum_ph": 7.0,
        "genome_size": 2104897.156,
        "gc_content": 40.198,
        "coding_genes": 1805.666,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Veillonellales",
        "f__Veillonellaceae",
        "g__Veillonella",
        "s__Veillonella sp900550175"
    ],
    "_genome_taxon": [
        "Veillonella",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Veillonellales",
        "f__Veillonellaceae",
        "g__Veillonella",
        "s__Veillonella sp900550175",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Veillonellales",
        "Veillonellaceae",
        "Veillonella",
        "Veillonella",
        "sp900550175"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}