{
    "type": "genome",
    "identifier": "GCA_018382595.1",
    "organism": "Actinomyces sp.",
    "title": "Actinomyces sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018382595.1",
        "bioproject": "PRJNA698986",
        "biosample": "SAMN17801053",
        "wgs_master": "JAGZPQ000000000.1",
        "refseq_category": "na",
        "taxid": "29317",
        "species_taxid": "29317",
        "organism_name": "Actinomyces sp.",
        "infraspecific_name": "",
        "isolate": "L3_122_000G1_dasL3_122_000G1_concoct_55",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/17",
        "asm_name": "ASM1838259v1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/382/595/GCA_018382595.1_ASM1838259v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-17",
    "dateModified": "2021-05-17",
    "datePublished": "2021-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomyces sp."
        ],
        "sample_taxid": [
            "29317"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Pittsburgh, Magee-Womens Hospital of UPMC"
        ],
        "sample_host_location_id": [],
        "data_size": "0.622 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2227043",
        "Number of Sequences": "202",
        "Longest Sequences (bp)": "68752",
        "N50 (bp)": "15741",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.9",
        "Number of CDSs": "1735",
        "Average Protein Length": "340.3",
        "Coding Ratio (%)": "79.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Schaalia meyeri",
                "strain": "strain=DSM 20733",
                "accession": "GCA_900105015.1",
                "taxid": 52773,
                "species_taxid": 52773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4871,
                "matched_fragments": 419,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schaalia meyeri",
                "strain": "strain=FDAARGOS_985",
                "accession": "GCA_016127995.1",
                "taxid": 52773,
                "species_taxid": 52773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3949,
                "matched_fragments": 437,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schaalia hyovaginalis",
                "strain": "strain=DSM 10695",
                "accession": "GCA_014208035.1",
                "taxid": 29316,
                "species_taxid": 29316,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4137,
                "matched_fragments": 243,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schaalia vaccimaxillae",
                "strain": "strain=DSM 15804",
                "accession": "GCA_000420425.1",
                "taxid": 183916,
                "species_taxid": 183916,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9627,
                "matched_fragments": 109,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces provencensis",
                "strain": "strain=SN12",
                "accession": "GCA_900155435.1",
                "taxid": 1720198,
                "species_taxid": 1720198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7563,
                "matched_fragments": 208,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces polynesiensis",
                "strain": "strain=MS2",
                "accession": "GCA_000820725.1",
                "taxid": 1325934,
                "species_taxid": 1325934,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4607,
                "matched_fragments": 185,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces radicidentis",
                "strain": "strain=CCUG 36733",
                "accession": "GCA_001553565.1",
                "taxid": 111015,
                "species_taxid": 111015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2628,
                "matched_fragments": 195,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces haliotis",
                "strain": "strain=JCM 18848",
                "accession": "GCA_015355765.1",
                "taxid": 1280843,
                "species_taxid": 1280843,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0893,
                "matched_fragments": 176,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces marmotae",
                "strain": "strain=zg-325",
                "accession": "GCA_009829655.1",
                "taxid": 2737173,
                "species_taxid": 2737173,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7273,
                "matched_fragments": 148,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9865,
                "matched_fragments": 138,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Demequina rhizosphaerae",
                "strain": "strain=NBRC 109397",
                "accession": "GCA_000971255.1",
                "taxid": 1638985,
                "species_taxid": 1638985,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9736,
                "matched_fragments": 122,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas timonensis",
                "strain": "strain=SN7",
                "accession": "GCA_900046455.1",
                "taxid": 1689271,
                "species_taxid": 1689271,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9593,
                "matched_fragments": 115,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arsenicicoccus bolidensis",
                "strain": "strain=DSM 15745",
                "accession": "GCA_000426385.1",
                "taxid": 229480,
                "species_taxid": 229480,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6182,
                "matched_fragments": 109,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas fulva",
                "strain": "strain=DKR-3",
                "accession": "GCA_018531375.1",
                "taxid": 2835530,
                "species_taxid": 2835530,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5985,
                "matched_fragments": 135,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
                "strain": "strain=ATCC 33566",
                "accession": "GCA_002240635.1",
                "taxid": 31965,
                "species_taxid": 28447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5577,
                "matched_fragments": 97,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter michiganensis subsp. tessellarius",
                "strain": "strain=ATCC 33566",
                "accession": "GCA_021922985.1",
                "taxid": 31965,
                "species_taxid": 28447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5369,
                "matched_fragments": 93,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseosporeus",
                "strain": "strain=JCM 4766",
                "accession": "GCA_014656055.1",
                "taxid": 1910,
                "species_taxid": 1910,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0203,
                "matched_fragments": 110,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces asoensis",
                "strain": "strain=NBRC 13813",
                "accession": "GCA_016860545.1",
                "taxid": 249586,
                "species_taxid": 249586,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9199,
                "matched_fragments": 109,
                "total_fragments": 638,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018382595.1",
                "gtdb_species": "s__Pauljensenia sp018382595",
                "ani": 100.0,
                "matched_fragments": 631,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_005696695.1",
                "gtdb_species": "s__Pauljensenia odontolytica_C",
                "ani": 94.8916,
                "matched_fragments": 604,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_001072465.1",
                "gtdb_species": "s__Pauljensenia sp001072465",
                "ani": 94.8644,
                "matched_fragments": 594,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "97.78",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018375675.1",
                "gtdb_species": "s__Pauljensenia sp018375675",
                "ani": 94.0783,
                "matched_fragments": 569,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009730335.1",
                "gtdb_species": "s__Pauljensenia odontolytica_A",
                "ani": 93.5087,
                "matched_fragments": 600,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.93",
                "min_intra_species_ani": "96.74",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001838165.1",
                "gtdb_species": "s__Pauljensenia sp001838165",
                "ani": 93.1133,
                "matched_fragments": 587,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.43",
                "min_intra_species_ani": "95.77",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002847525.1",
                "gtdb_species": "s__Pauljensenia odontolytica_B",
                "ani": 92.4647,
                "matched_fragments": 575,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "96.22",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001064145.1",
                "gtdb_species": "s__Pauljensenia sp001064145",
                "ani": 92.2484,
                "matched_fragments": 577,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.165,
        "cell_length": 0.258,
        "doubling_h": null,
        "growth_tmp": 36.951,
        "optimum_tmp": 36.833,
        "optimum_ph": 7.0,
        "genome_size": 2699137.843,
        "gc_content": 65.627,
        "coding_genes": 2308.7,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 49.8,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.2,
        "anaerobic_respiration": 0.428,
        "aerobic_respiration": 0.371,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.95,
        "coccus_cell_shape": 0.05,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Actinomycetaceae",
        "g__Pauljensenia",
        "s__Pauljensenia sp018382595"
    ],
    "_genome_taxon": [
        "Actinomyces",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Actinomycetaceae",
        "g__Pauljensenia",
        "s__Pauljensenia sp018382595",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Actinomycetaceae",
        "Pauljensenia",
        "Pauljensenia",
        "sp018382595"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}