{
    "type": "genome",
    "identifier": "GCA_018389055.1",
    "organism": "Thermoflexus hugenholtzii",
    "title": "Thermoflexus hugenholtzii",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018389055.1",
        "bioproject": "PRJNA442911",
        "biosample": "SAMN17004567",
        "wgs_master": "JAEILQ000000000.1",
        "refseq_category": "na",
        "taxid": "1495650",
        "species_taxid": "1495650",
        "organism_name": "Thermoflexus hugenholtzii",
        "infraspecific_name": "",
        "isolate": "GBS85-2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/17",
        "asm_name": "ASM1838905v1",
        "submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCF_018389055.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/389/055/GCA_018389055.1_ASM1838905v1",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-17",
    "dateModified": "2021-05-17",
    "datePublished": "2021-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermoflexus hugenholtzii"
        ],
        "sample_taxid": [
            "1495650"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Great Boiling Springs, Gerlach, Nevada"
        ],
        "sample_host_location_id": [],
        "data_size": "1.078 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.37,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3900006",
        "Number of Sequences": "356",
        "Longest Sequences (bp)": "82772",
        "N50 (bp)": "15878",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.0",
        "Number of CDSs": "3360",
        "Average Protein Length": "316.3",
        "Coding Ratio (%)": "81.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thermoflexus hugenholtzii",
                "strain": "strain=JAD2",
                "accession": "GCA_900187885.1",
                "taxid": 1495650,
                "species_taxid": 1495650,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.8362,
                "matched_fragments": 899,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermus filiformis",
                "strain": "strain=ATCC 43280",
                "accession": "GCA_000771745.2",
                "taxid": 276,
                "species_taxid": 276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0801,
                "matched_fragments": 70,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaeromyxobacter dehalogenans",
                "strain": "strain=2CP-1",
                "accession": "GCA_000022145.1",
                "taxid": 161493,
                "species_taxid": 161493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7546,
                "matched_fragments": 65,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes regularis",
                "strain": "strain=DSM 43151",
                "accession": "GCA_900188005.1",
                "taxid": 52697,
                "species_taxid": 52697,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7496,
                "matched_fragments": 71,
                "total_fragments": 1145,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.37,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900187885.1",
                "gtdb_species": "s__Thermoflexus hugenholtzii",
                "ani": 98.8633,
                "matched_fragments": 898,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "95.14",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017743605.1",
                "gtdb_species": "s__Thermoflexus sp017743605",
                "ani": 89.2258,
                "matched_fragments": 563,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011048055.1",
                "gtdb_species": "s__Thermoflexus sp011048055",
                "ani": 82.5763,
                "matched_fragments": 637,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002898735.1",
                "gtdb_species": "s__Thermoflexus japonica",
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                "matched_fragments": 564,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016842085.1",
                "gtdb_species": "s__Thermoflexus tengchongensis",
                "ani": 81.5742,
                "matched_fragments": 685,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011373175.1",
                "gtdb_species": "s__Thermoflexus sinensis",
                "ani": 80.3848,
                "matched_fragments": 413,
                "total_fragments": 1145,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Thermoflexales;f__Thermoflexaceae;g__Thermoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.51",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__Thermoflexales",
        "f__Thermoflexaceae",
        "g__Thermoflexus",
        "s__Thermoflexus hugenholtzii"
    ],
    "_genome_taxon": [
        "Thermoflexus",
        "hugenholtzii",
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__Thermoflexales",
        "f__Thermoflexaceae",
        "g__Thermoflexus",
        "s__Thermoflexus hugenholtzii",
        "Bacteria",
        "Chloroflexota",
        "Anaerolineae",
        "Thermoflexales",
        "Thermoflexaceae",
        "Thermoflexus",
        "Thermoflexus",
        "hugenholtzii"
    ],
    "_meo": [
        {
            "id": "MEO_0000029",
            "label": "hot spring"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}