{ "type": "genome", "identifier": "GCA_018399655.1", "organism": "Campylobacterales bacterium", "title": "Campylobacterales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018399655.1", "bioproject": "PRJNA721826", "biosample": "SAMN19006038", "wgs_master": "JAGYNS000000000.1", "refseq_category": "na", "taxid": "2268180", "species_taxid": "2268180", "organism_name": "Campylobacterales bacterium", "infraspecific_name": "", "isolate": "M55B150", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/19", "asm_name": "ASM1839965v1", "submitter": "Academia Sinica", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/399/655/GCA_018399655.1_ASM1839965v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-19", "dateModified": "2021-05-19", "datePublished": "2021-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacterales bacterium" ], "sample_taxid": [ "2268180" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Republic of Khakassia, Shirinsky District, Lake Shunet" ], "sample_host_location_id": [], "data_size": "0.567 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 4.55, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2032412", "Number of Sequences": "355", "Longest Sequences (bp)": "76298", "N50 (bp)": "10071", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.3", "Number of CDSs": "1805", "Average Protein Length": "268.7", "Coding Ratio (%)": "71.6", "Number of rRNAs": "4", "Number of tRNAs": "16", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arcobacter cloacae", "strain": "strain=LMG 26153", "accession": "GCA_013201935.1", "taxid": 1054034, "species_taxid": 1054034, "relation_to_type": "type", "validated": true, "ani": 76.9994, "matched_fragments": 56, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter cloacae", "strain": "strain=CECT 7834", "accession": "GCA_004115805.1", "taxid": 1054034, "species_taxid": 1054034, "relation_to_type": "type", "validated": true, "ani": 76.8157, "matched_fragments": 55, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter defluvii", "strain": "strain=LMG 25694", "accession": "GCA_013201725.1", "taxid": 873191, "species_taxid": 873191, "relation_to_type": "type", "validated": true, "ani": 76.7956, "matched_fragments": 63, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=LMG 26154", "accession": "GCA_003346815.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 76.7778, "matched_fragments": 60, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter cryaerophilus", "strain": "strain=LMG 9904", "accession": "GCA_006165035.1", "taxid": 28198, "species_taxid": 28198, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6604, "matched_fragments": 54, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter thereius", "strain": "strain=LMG 24486", "accession": "GCA_001695395.1", "taxid": 544718, "species_taxid": 544718, "relation_to_type": "type", "validated": true, "ani": 76.6027, "matched_fragments": 62, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter defluvii", "strain": "strain=CECT 7697", "accession": "GCA_004115775.1", "taxid": 873191, "species_taxid": 873191, "relation_to_type": "type", "validated": true, "ani": 76.5577, "matched_fragments": 63, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter thereius", "strain": "strain=LMG 24486", "accession": "GCA_004214815.1", "taxid": 544718, "species_taxid": 544718, "relation_to_type": "type", "validated": true, "ani": 76.5308, "matched_fragments": 61, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Arcobacter] porcinus", "strain": "strain=CCUG 56899", "accession": "GCA_004299785.2", "taxid": 1935204, "species_taxid": 1935204, "relation_to_type": "type", "validated": true, "ani": 76.5222, "matched_fragments": 59, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter caeni", "strain": "strain=RW17-10", "accession": "GCA_003063245.1", "taxid": 1912877, "species_taxid": 1912877, "relation_to_type": "type", "validated": true, "ani": 76.4805, "matched_fragments": 65, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=LMG 26155", "accession": "GCA_003544915.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 76.4737, "matched_fragments": 73, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter venerupis", "strain": "strain=LMG 26156", "accession": "GCA_013201665.1", "taxid": 1054033, "species_taxid": 1054033, "relation_to_type": "type", "validated": true, "ani": 76.4185, "matched_fragments": 52, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter thereius", "strain": "strain=LMG 24486", "accession": "GCA_024584025.1", "taxid": 544718, "species_taxid": 544718, "relation_to_type": "type", "validated": true, "ani": 76.3716, "matched_fragments": 62, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter cryaerophilus", "strain": "strain=LMG 24291", "accession": "GCA_002992955.1", "taxid": 28198, "species_taxid": 28198, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3357, "matched_fragments": 52, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter thereius", "strain": "strain=DSM 23385", "accession": "GCA_005818985.1", "taxid": 544718, "species_taxid": 544718, "relation_to_type": "type", "validated": true, "ani": 76.3312, "matched_fragments": 60, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=CECT 7837", "accession": "GCA_004115815.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 76.3021, "matched_fragments": 72, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter venerupis", "strain": "strain=CECT7836", "accession": "GCA_004023405.1", "taxid": 1054033, "species_taxid": 1054033, "relation_to_type": "type", "validated": true, "ani": 76.2058, "matched_fragments": 51, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 4.55, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018399655.1", "gtdb_species": "s__CAIJNA01 sp018399655", "ani": 100.0, "matched_fragments": 476, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__CAIJNA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003544835.1", "gtdb_species": "s__Aliarcobacter skirrowii", "ani": 77.2132, "matched_fragments": 52, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.32", "min_intra_species_ani": "95.07", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_013201935.1", "gtdb_species": "s__Aliarcobacter cloacae", "ani": 76.9994, "matched_fragments": 56, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "95.91", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003660105.1", "gtdb_species": "s__Aliarcobacter cryaerophilus", "ani": 76.8612, "matched_fragments": 54, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013201725.1", "gtdb_species": "s__Aliarcobacter defluvii", "ani": 76.7651, "matched_fragments": 64, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_004116465.1", "gtdb_species": "s__Arcobacter sp004116465", "ani": 76.7432, "matched_fragments": 70, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Arcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004116725.1", "gtdb_species": "s__Malaciobacter sp004116725", "ani": 76.5294, "matched_fragments": 64, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Malaciobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017995775.1", "gtdb_species": "s__Aliarcobacter sp017995775", "ani": 76.5257, "matched_fragments": 59, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003063245.1", "gtdb_species": "s__Aliarcobacter caeni", "ani": 76.5107, "matched_fragments": 64, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003544915.1", "gtdb_species": "s__Aliarcobacter ellisii", "ani": 76.4826, "matched_fragments": 74, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.73", "min_intra_species_ani": "97.46", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013201665.1", "gtdb_species": "s__Aliarcobacter venerupis", "ani": 76.4185, "matched_fragments": 52, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003252105.1", "gtdb_species": "s__Halarcobacter sp003252105", "ani": 76.3063, "matched_fragments": 75, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Halarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004214815.1", "gtdb_species": "s__Aliarcobacter thereius", "ani": 76.3029, "matched_fragments": 61, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.259, "doubling_h": 0.335, "growth_tmp": 35.128, "optimum_tmp": 33.644, "optimum_ph": 6.803, "genome_size": 2102520.983, "gc_content": 35.015, "coding_genes": 2000.919, "rRNA16S_genes": 2.702, "tRNA_genes": 43.881, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.89, "range_salinity": 0.5, "facultative_respiration": 0.033, "anaerobic_respiration": 0.112, "aerobic_respiration": 0.853, "mesophilic_range_tmp": 0.968, "thermophilic_range_tmp": 0.031, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.368, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.017, "vibrio_cell_shape": 0.087, "spiral_cell_shape": 0.526 }, "_gtdb_taxon": [ "d__Bacteria", "p__Campylobacterota", "c__Campylobacteria", "o__Campylobacterales", "f__Arcobacteraceae", "g__JAIOSF01", "s__JAIOSF01 sp018399655" ], "_genome_taxon": [ "Campylobacterales", "bacterium", "d__Bacteria", "p__Campylobacterota", "c__Campylobacteria", "o__Campylobacterales", "f__Arcobacteraceae", "g__JAIOSF01", "s__JAIOSF01 sp018399655", "Bacteria", "Campylobacterota", "Campylobacteria", "Campylobacterales", "Arcobacteraceae", "JAIOSF01", "JAIOSF01", "sp018399655" ], "_meo": [ { "id": "MEO_0000177", "label": "salt lake" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }