{
    "type": "genome",
    "identifier": "GCA_018400095.1",
    "organism": "Thiocapsa sp.",
    "title": "Thiocapsa sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Academia Sinica",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018400095.1",
        "bioproject": "PRJNA721826",
        "biosample": "SAMN19006026",
        "wgs_master": "JAGYNG000000000.1",
        "refseq_category": "na",
        "taxid": "2024551",
        "species_taxid": "2024551",
        "organism_name": "Thiocapsa sp.",
        "infraspecific_name": "",
        "isolate": "M55B139",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/19",
        "asm_name": "ASM1840009v1",
        "submitter": "Academia Sinica",
        "gbrs_paired_asm": "GCF_018400095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/400/095/GCA_018400095.1_ASM1840009v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-19",
    "dateModified": "2021-05-19",
    "datePublished": "2021-05-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thiocapsa sp."
        ],
        "sample_taxid": [
            "2024551"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Republic of Khakassia, Shirinsky District, Lake Shunet"
        ],
        "sample_host_location_id": [],
        "data_size": "1.521 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5517153",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "1383509",
        "N50 (bp)": "940774",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.0",
        "Number of CDSs": "5128",
        "Average Protein Length": "298.9",
        "Coding Ratio (%)": "83.3",
        "Number of rRNAs": "5",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Thiocapsa rosea",
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                "accession": "GCA_003634315.1",
                "taxid": 69360,
                "species_taxid": 69360,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1339,
                "total_fragments": 1833,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa roseopersicina",
                "strain": "strain=DSM 217",
                "accession": "GCA_900106925.1",
                "taxid": 1058,
                "species_taxid": 1058,
                "relation_to_type": "type",
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                "ani": 89.614,
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                "total_fragments": 1833,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa marina",
                "strain": "strain=5811",
                "accession": "GCA_000223985.2",
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                "species_taxid": 244573,
                "relation_to_type": "type",
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                "ani": 88.1348,
                "matched_fragments": 1237,
                "total_fragments": 1833,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa bogorovii",
                "strain": "strain=BBS",
                "accession": "GCA_021228795.1",
                "taxid": 521689,
                "species_taxid": 521689,
                "relation_to_type": "type",
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                "ani": 87.2922,
                "matched_fragments": 1204,
                "total_fragments": 1833,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allochromatium vinosum",
                "strain": "strain=DSM 180",
                "accession": "GCA_000025485.1",
                "taxid": 1049,
                "species_taxid": 1049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1782,
                "matched_fragments": 460,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocystis violacea",
                "strain": "strain=DSM 207",
                "accession": "GCA_016583575.1",
                "taxid": 13725,
                "species_taxid": 13725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0519,
                "matched_fragments": 539,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
                "strain": "strain=DSM 203",
                "accession": "GCA_004343155.1",
                "taxid": 1048,
                "species_taxid": 1048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8496,
                "matched_fragments": 504,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allochromatium tepidum",
                "strain": "strain=NZ",
                "accession": "GCA_018409545.1",
                "taxid": 553982,
                "species_taxid": 553982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8445,
                "matched_fragments": 476,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiorhodococcus mannitoliphagus",
                "strain": "strain=DSM 18266",
                "accession": "GCA_010915725.1",
                "taxid": 329406,
                "species_taxid": 329406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2751,
                "matched_fragments": 449,
                "total_fragments": 1833,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiohalobacter thiocyanaticus",
                "strain": "strain=Hrh1",
                "accession": "GCA_003932505.1",
                "taxid": 585455,
                "species_taxid": 585455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0709,
                "matched_fragments": 157,
                "total_fragments": 1833,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=FDAARGOS_876",
                "accession": "GCA_016028635.1",
                "taxid": 2968968,
                "species_taxid": 2968968,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.4247,
                "matched_fragments": 110,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=DSM 50238",
                "accession": "GCA_024448505.1",
                "taxid": 2968968,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1185,
                "matched_fragments": 106,
                "total_fragments": 1833,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCA_018399035.1",
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                "total_fragments": 1833,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiocapsa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.89",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiocapsa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            {
                "accession": "GCA_011390875.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiocapsa",
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                "mean_intra_species_ani": "N/A",
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            },
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            {
                "accession": "GCF_001499735.1",
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            },
            {
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": 0.183,
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        "range_salinity": null,
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    "_gtdb_taxon": [
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    "_genome_taxon": [
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    "_meo": [
        {
            "id": "MEO_0000177",
            "label": "salt lake"
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}