{ "type": "genome", "identifier": "GCA_018401435.1", "organism": "Deltaproteobacteria bacterium", "title": "Deltaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018401435.1", "bioproject": "PRJNA721826", "biosample": "SAMN19005938", "wgs_master": "JAGYJW000000000.1", "refseq_category": "na", "taxid": "2026735", "species_taxid": "2026735", "organism_name": "Deltaproteobacteria bacterium", "infraspecific_name": "", "isolate": "M30B51", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/19", "asm_name": "ASM1840143v1", "submitter": "Academia Sinica", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/401/435/GCA_018401435.1_ASM1840143v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-19", "dateModified": "2021-05-19", "datePublished": "2021-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Deltaproteobacteria bacterium" ], "sample_taxid": [ "2026735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Republic of Khakassia, Shirinsky District, Lake Shunet" ], "sample_host_location_id": [], "data_size": "1.924 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 6.25, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7131731", "Number of Sequences": "204", "Longest Sequences (bp)": "321601", "N50 (bp)": "109553", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.5", "Number of CDSs": "6355", "Average Protein Length": "324.5", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "14" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 75.0919, "matched_fragments": 109, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalorhabdus denitrificans", "strain": "strain=HL 19", "accession": "GCA_900101365.1", "taxid": 381306, "species_taxid": 381306, "relation_to_type": "type", "validated": true, "ani": 75.042, "matched_fragments": 118, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 75.0165, "matched_fragments": 112, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas winnipegensis", "strain": "strain=NML 130738", "accession": "GCA_004283755.1", "taxid": 2480810, "species_taxid": 2480810, "relation_to_type": "type", "validated": true, "ani": 75.0139, "matched_fragments": 168, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira hankyongi", "strain": "strain=NY-02", "accession": "GCA_003570885.1", "taxid": 2315688, "species_taxid": 2315688, "relation_to_type": "type", "validated": true, "ani": 75.0078, "matched_fragments": 71, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalorhabdus denitrificans", "strain": "strain=HL 19", "accession": "GCA_001399755.1", "taxid": 381306, "species_taxid": 381306, "relation_to_type": "type", "validated": true, "ani": 75.0034, "matched_fragments": 115, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 74.9997, "matched_fragments": 237, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalospira halophila", "strain": "strain=HL 3", "accession": "GCA_900112605.1", "taxid": 381300, "species_taxid": 381300, "relation_to_type": "type", "validated": true, "ani": 74.9781, "matched_fragments": 99, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella aurantiaca", "strain": "strain=DSM 17044", "accession": "GCA_900109545.1", "taxid": 41, "species_taxid": 41, "relation_to_type": "type", "validated": true, "ani": 74.9628, "matched_fragments": 254, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas colneyensis", "strain": "strain=Sa2BVA3", "accession": "GCA_014836665.1", "taxid": 2762230, "species_taxid": 2762230, "relation_to_type": "type", "validated": true, "ani": 74.9451, "matched_fragments": 140, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas fraxinea", "strain": "strain=D4P002", "accession": "GCA_021233355.1", "taxid": 2901869, "species_taxid": 2901869, "relation_to_type": "type", "validated": true, "ani": 74.9419, "matched_fragments": 63, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella hybrida", "strain": "strain=DSM 14722", "accession": "GCA_020103775.1", "taxid": 394097, "species_taxid": 394097, "relation_to_type": "type", "validated": true, "ani": 74.9405, "matched_fragments": 241, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 74.9285, "matched_fragments": 271, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 74.9258, "matched_fragments": 93, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas huabeiensis", "strain": "strain=HB2", "accession": "GCA_000559025.1", "taxid": 1244513, "species_taxid": 1244513, "relation_to_type": "type", "validated": true, "ani": 74.9251, "matched_fragments": 194, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter soli", "strain": "strain=Ji-3-8", "accession": "GCA_011045195.1", "taxid": 2708539, "species_taxid": 2708539, "relation_to_type": "type", "validated": true, "ani": 74.9173, "matched_fragments": 176, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium gallinarum", "strain": "strain=JCM 17207", "accession": "GCA_022180365.1", "taxid": 2903556, "species_taxid": 2903556, "relation_to_type": "type", "validated": true, "ani": 74.9164, "matched_fragments": 54, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, "species_taxid": 1189325, "relation_to_type": "type", "validated": true, "ani": 74.901, "matched_fragments": 158, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium violaceum", "strain": "strain=Cb vi76", "accession": "GCA_000733295.1", "taxid": 83451, "species_taxid": 83451, "relation_to_type": "type", "validated": true, "ani": 74.8898, "matched_fragments": 288, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium aurulentum", "strain": "strain=SDU3-1", "accession": "GCA_005144635.2", "taxid": 2567896, "species_taxid": 2567896, "relation_to_type": "type", "validated": true, "ani": 74.8847, "matched_fragments": 183, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis gilva", "strain": "strain=YIM 90087", "accession": "GCA_002263495.1", "taxid": 280236, "species_taxid": 280236, "relation_to_type": "type", "validated": true, "ani": 74.8813, "matched_fragments": 134, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas arsenica", "strain": "strain=26-35", "accession": "GCA_004352825.1", "taxid": 1586242, "species_taxid": 1586242, "relation_to_type": "type", "validated": true, "ani": 74.8713, "matched_fragments": 127, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_001027285.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 74.8704, "matched_fragments": 295, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis gilva", "strain": "strain=YIM 90087", "accession": "GCA_000341165.1", "taxid": 280236, "species_taxid": 280236, "relation_to_type": "type", "validated": true, "ani": 74.839, "matched_fragments": 123, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_003387095.1", "taxid": 48, 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74.7587, "matched_fragments": 229, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter flagellatus", "strain": "strain=SYSU G03088", "accession": "GCA_008271465.1", "taxid": 2593021, "species_taxid": 2593021, "relation_to_type": "type", "validated": true, "ani": 74.7534, "matched_fragments": 94, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora salina", "strain": "strain=DSM 44593", "accession": "GCA_014204715.1", "taxid": 104205, "species_taxid": 104205, "relation_to_type": "type", "validated": true, "ani": 74.741, "matched_fragments": 196, "total_fragments": 2276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura kijaniata", "strain": "strain=NBRC 14229", "accession": "GCA_001552175.1", "taxid": 46161, "species_taxid": 46161, "relation_to_type": "type", "validated": true, "ani": 74.7257, "matched_fragments": 346, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002320815.1", "gtdb_species": "s__UBA1660 sp002320815", "ani": 75.0447, "matched_fragments": 252, "total_fragments": 2276, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__SG8-38;g__UBA1660", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002127215.1", "gtdb_species": "s__Hydrogenophaga sp002127215", "ani": 75.0116, "matched_fragments": 141, "total_fragments": 2276, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, 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