{ "type": "genome", "identifier": "GCA_018402035.1", "organism": "Roseicyclus sp.", "title": "Roseicyclus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018402035.1", "bioproject": "PRJNA721826", "biosample": "SAMN19005929", "wgs_master": "JAGYJN000000000.1", "refseq_category": "na", "taxid": "1914329", "species_taxid": "1914329", "organism_name": "Roseicyclus sp.", "infraspecific_name": "", "isolate": "M30B42", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/19", "asm_name": "ASM1840203v1", "submitter": "Academia Sinica", "gbrs_paired_asm": "GCF_018402035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/402/035/GCA_018402035.1_ASM1840203v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-19", "dateModified": "2021-05-19", "datePublished": "2021-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseicyclus sp." ], "sample_taxid": [ "1914329" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Republic of Khakassia, Shirinsky District, Lake Shunet" ], "sample_host_location_id": [], "data_size": "0.841 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.11, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3029878", "Number of Sequences": "89", "Longest Sequences (bp)": "817707", "N50 (bp)": "356315", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.4", "Number of CDSs": "2979", "Average Protein Length": "297.2", "Coding Ratio (%)": "87.7", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 78.7318, "matched_fragments": 452, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 77.9901, "matched_fragments": 272, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdonatronobacter sediminivivens", "strain": "strain=IM2376", "accession": "GCA_013415485.1", "taxid": 2743469, "species_taxid": 2743469, "relation_to_type": "type", "validated": true, "ani": 77.2411, "matched_fragments": 232, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseicitreum antarcticum", "strain": "strain=ZS2-28", "accession": "GCA_014681765.1", "taxid": 564137, "species_taxid": 564137, "relation_to_type": "type", "validated": true, "ani": 77.2125, "matched_fragments": 218, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga dicentrarchi", "strain": "strain=YLY04", "accession": "GCA_003316635.1", "taxid": 2250573, "species_taxid": 2250573, "relation_to_type": "type", "validated": true, "ani": 77.198, "matched_fragments": 203, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" 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aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 77.1114, "matched_fragments": 205, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=DSM 18065", "accession": "GCA_000688295.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 77.1071, "matched_fragments": 203, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius faecimaris", "strain": "strain=MME-070", "accession": "GCA_009762325.1", "taxid": 2494550, "species_taxid": 2494550, "relation_to_type": "type", "validated": true, "ani": 77.088, "matched_fragments": 226, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=DSM 29507", "accession": 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