{ "type": "genome", "identifier": "GCA_018402385.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018402385.1", "bioproject": "PRJNA721826", "biosample": "SAMN19005916", "wgs_master": "JAGYJA000000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "M30B29", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/19", "asm_name": "ASM1840238v1", "submitter": "Academia Sinica", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/402/385/GCA_018402385.1_ASM1840238v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-19", "dateModified": "2021-05-19", "datePublished": "2021-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Republic of Khakassia, Shirinsky District, Lake Shunet" ], "sample_host_location_id": [], "data_size": "0.778 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2776294", "Number of Sequences": "11", "Longest Sequences (bp)": "785544", "N50 (bp)": "346376", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.3", "Number of CDSs": "2647", "Average Protein Length": "309.3", "Coding Ratio (%)": "88.5", "Number of rRNAs": "4", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planktosalinus lacus", "strain": "strain=CGMCC 1.12924", "accession": "GCA_014640155.1", "taxid": 1526573, "species_taxid": 1526573, "relation_to_type": "type", "validated": true, "ani": 79.9762, "matched_fragments": 428, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 77.804, "matched_fragments": 56, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Constantimarinum furrinae", "strain": "strain=ALE3EI", "accession": "GCA_014295415.1", "taxid": 2562285, "species_taxid": 2562285, "relation_to_type": "type", "validated": true, "ani": 77.4707, "matched_fragments": 74, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altibacter lentus", "strain": "strain=JLT2010", "accession": "GCA_000746845.1", "taxid": 1223410, "species_taxid": 1223410, "relation_to_type": "type", "validated": true, "ani": 77.4246, "matched_fragments": 61, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita sinensis", "strain": "strain=S1-10", "accession": "GCA_006346335.1", "taxid": 1382458, "species_taxid": 1382458, "relation_to_type": "type", "validated": true, "ani": 77.2138, "matched_fragments": 75, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=KCTC 12104", "accession": "GCA_014651275.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 77.1806, "matched_fragments": 91, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita iocasae", "strain": "strain=KX20305", "accession": "GCA_016757735.1", "taxid": 2803865, "species_taxid": 2803865, "relation_to_type": "type", "validated": true, "ani": 77.0941, "matched_fragments": 82, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=DSM 16195", "accession": "GCA_900102055.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 76.9254, "matched_fragments": 90, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomarinibacterium sedimenti", "strain": "strain=CAU 1614", "accession": "GCA_019312585.1", "taxid": 2857106, "species_taxid": 2857106, "relation_to_type": "type", "validated": true, "ani": 76.8477, "matched_fragments": 78, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens mesophilus", "strain": "strain=JCM 13413", "accession": "GCA_000826645.1", "taxid": 325473, "species_taxid": 325473, "relation_to_type": "type", "validated": true, "ani": 76.8355, "matched_fragments": 62, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix jangbogonensis", "strain": "strain=PAMC 27137", "accession": "GCA_000797445.1", "taxid": 1469557, "species_taxid": 1469557, "relation_to_type": "type", "validated": true, "ani": 76.8262, "matched_fragments": 63, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina brevivitae", "strain": "strain=DSM 17196", "accession": "GCA_004216895.1", "taxid": 323412, "species_taxid": 323412, "relation_to_type": "type", "validated": true, "ani": 76.8223, "matched_fragments": 52, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marixanthomonas spongiae", "strain": "strain=HN-E44", "accession": "GCA_003095375.1", "taxid": 2174845, "species_taxid": 2174845, "relation_to_type": "type", "validated": true, "ani": 76.789, "matched_fragments": 72, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.5921, "matched_fragments": 69, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesonia phycicola", "strain": "strain=DSM 21425", "accession": "GCA_900141885.1", "taxid": 579105, "species_taxid": 579105, "relation_to_type": "type", "validated": true, "ani": 76.5638, "matched_fragments": 69, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ursingii", "strain": "strain=HL4150", "accession": "GCA_013403975.1", "taxid": 2686079, "species_taxid": 2686079, "relation_to_type": "type", "validated": true, "ani": 76.4778, "matched_fragments": 63, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.4473, "matched_fragments": 73, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 76.3796, "matched_fragments": 50, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariibaculum sediminum", "strain": "strain=TT11", "accession": "GCA_014596945.1", "taxid": 2770637, "species_taxid": 2770637, "relation_to_type": "type", "validated": true, "ani": 76.3782, "matched_fragments": 54, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=ATCC 19366", "accession": "GCA_002217365.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 76.2976, "matched_fragments": 63, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina muelleri", "strain": "strain=DSM 19832", "accession": "GCA_000430665.1", "taxid": 279356, "species_taxid": 279356, "relation_to_type": "type", "validated": true, "ani": 76.1576, "matched_fragments": 65, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina muelleri", "strain": 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