{
    "type": "genome",
    "identifier": "GCA_018402485.1",
    "organism": "Roseivirga sp.",
    "title": "Roseivirga sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Academia Sinica",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018402485.1",
        "bioproject": "PRJNA721826",
        "biosample": "SAMN19005914",
        "wgs_master": "JAGYIY000000000.1",
        "refseq_category": "na",
        "taxid": "1964215",
        "species_taxid": "1964215",
        "organism_name": "Roseivirga sp.",
        "infraspecific_name": "",
        "isolate": "M30B27",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/19",
        "asm_name": "ASM1840248v1",
        "submitter": "Academia Sinica",
        "gbrs_paired_asm": "GCF_018402485.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/402/485/GCA_018402485.1_ASM1840248v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-19",
    "dateModified": "2021-05-19",
    "datePublished": "2021-05-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Roseivirga sp."
        ],
        "sample_taxid": [
            "1964215"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Republic of Khakassia, Shirinsky District, Lake Shunet"
        ],
        "sample_host_location_id": [],
        "data_size": "0.727 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2572905",
        "Number of Sequences": "17",
        "Longest Sequences (bp)": "1523056",
        "N50 (bp)": "1523056",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.5",
        "Number of CDSs": "2311",
        "Average Protein Length": "330.8",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Roseivirga pacifica",
                "strain": "strain=DSM 100771",
                "accession": "GCA_003633845.1",
                "taxid": 1267423,
                "species_taxid": 1267423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8288,
                "matched_fragments": 70,
                "total_fragments": 849,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivirga pacifica",
                "strain": "strain=CGMCC 1.12402",
                "accession": "GCA_900111145.1",
                "taxid": 1267423,
                "species_taxid": 1267423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7363,
                "matched_fragments": 70,
                "total_fragments": 849,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivirga echinicomitans",
                "strain": "strain=KMM 6058",
                "accession": "GCA_001592935.1",
                "taxid": 296218,
                "species_taxid": 296218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5951,
                "matched_fragments": 60,
                "total_fragments": 849,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivirga spongicola",
                "strain": "strain=UST030701-084",
                "accession": "GCA_001592965.1",
                "taxid": 333140,
                "species_taxid": 333140,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5254,
                "matched_fragments": 75,
                "total_fragments": 849,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018402485.1",
                "gtdb_species": "s__Fabibacter sp018402485",
                "ani": 100.0,
                "matched_fragments": 848,
                "total_fragments": 849,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001747095.1",
                "gtdb_species": "s__Fabibacter sp001747095",
                "ani": 77.2232,
                "matched_fragments": 64,
                "total_fragments": 849,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111145.1",
                "gtdb_species": "s__Fabibacter pacificus",
                "ani": 76.9575,
                "matched_fragments": 71,
                "total_fragments": 849,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017592825.1",
                "gtdb_species": "s__Fabibacter sp017592825",
                "ani": 76.7293,
                "matched_fragments": 56,
                "total_fragments": 849,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001592935.1",
                "gtdb_species": "s__Roseivirga echinicomitans",
                "ani": 76.6326,
                "matched_fragments": 59,
                "total_fragments": 849,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Roseivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001592965.1",
                "gtdb_species": "s__Fabibacter spongicola",
                "ani": 76.5254,
                "matched_fragments": 75,
                "total_fragments": 849,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.73",
                "min_intra_species_ani": "96.54",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_013373005.1",
                "gtdb_species": "s__Fabibacter sp013373005",
                "ani": 76.2941,
                "matched_fragments": 68,
                "total_fragments": 849,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002786855.1",
                "gtdb_species": "s__Roseivirga sp002786855",
                "ani": 76.0496,
                "matched_fragments": 78,
                "total_fragments": 849,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Roseivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.408,
        "cell_length": 0.348,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 23.5,
        "optimum_ph": null,
        "genome_size": 4283322.833,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Cyclobacteriaceae",
        "g__Roseivirga",
        "s__Roseivirga sp018402485"
    ],
    "_genome_taxon": [
        "Roseivirga",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Cyclobacteriaceae",
        "g__Roseivirga",
        "s__Roseivirga sp018402485",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Cytophagales",
        "Cyclobacteriaceae",
        "Roseivirga",
        "Roseivirga",
        "sp018402485"
    ],
    "_meo": [
        {
            "id": "MEO_0000177",
            "label": "salt lake"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}