{ "type": "genome", "identifier": "GCA_018402525.1", "organism": "Crocinitomicaceae bacterium", "title": "Crocinitomicaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018402525.1", "bioproject": "PRJNA721826", "biosample": "SAMN19005907", "wgs_master": "JAGYIR000000000.1", "refseq_category": "na", "taxid": "2026728", "species_taxid": "2026728", "organism_name": "Crocinitomicaceae bacterium", "infraspecific_name": "", "isolate": "M30B20", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/19", "asm_name": "ASM1840252v1", "submitter": "Academia Sinica", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/402/525/GCA_018402525.1_ASM1840252v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-19", "dateModified": "2021-05-19", "datePublished": "2021-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Crocinitomicaceae bacterium" ], "sample_taxid": [ "2026728" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Republic of Khakassia, Shirinsky District, Lake Shunet" ], "sample_host_location_id": [], "data_size": "0.896 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.55, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3157214", "Number of Sequences": "19", "Longest Sequences (bp)": "767451", "N50 (bp)": "263345", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.5", "Number of CDSs": "2810", "Average Protein Length": "330.5", "Coding Ratio (%)": "88.2", "Number of rRNAs": "4", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brumimicrobium glaciale", "strain": "strain=IC156", "accession": "GCA_004152935.1", "taxid": 200475, "species_taxid": 200475, "relation_to_type": "type", "validated": true, "ani": 77.2676, "matched_fragments": 55, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lishizhenia tianjinensis", "strain": "strain=CGMCC 1.7005", "accession": "GCA_900116425.1", "taxid": 477690, "species_taxid": 477690, "relation_to_type": "type", "validated": true, "ani": 76.6542, "matched_fragments": 55, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Taishania pollutisoli", "strain": "strain=CZZ-1", "accession": "GCA_014518315.1", "taxid": 2766479, "species_taxid": 2766479, "relation_to_type": "type", "validated": true, "ani": 76.5895, "matched_fragments": 55, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.55, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_018402525.1", "gtdb_species": "s__UBA4466 sp018402525", "ani": 100.0, "matched_fragments": 1037, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA4466", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003856375.1", "gtdb_species": "s__Fluviicola amylolytica", "ani": 77.8458, "matched_fragments": 52, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003149635.1", "gtdb_species": "s__UBA4466 sp003149635", "ani": 77.3822, "matched_fragments": 79, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA4466", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905480145.1", "gtdb_species": "s__UBA4466 sp905480145", "ani": 77.273, "matched_fragments": 75, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA4466", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002734065.2", "gtdb_species": "s__UBA4466 sp002734065", "ani": 77.0883, "matched_fragments": 102, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA4466", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905480355.1", "gtdb_species": "s__UBA4466 sp002389415", "ani": 76.8029, "matched_fragments": 60, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA4466", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.55", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002734085.1", "gtdb_species": "s__Brumimicrobium sp002734085", "ani": 76.7919, "matched_fragments": 54, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Brumimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013373595.1", "gtdb_species": "s__UBA4466 sp013373595", "ani": 76.7472, "matched_fragments": 83, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA4466", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903945495.1", "gtdb_species": "s__M0103 sp903945495", "ani": 76.7458, "matched_fragments": 111, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__M0103", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.80", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_002483265.1", "gtdb_species": "s__Fluviicola sp002483265", "ani": 76.7007, "matched_fragments": 53, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Fluviicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013215515.1", "gtdb_species": "s__UBA4466 sp013215515", "ani": 76.6605, "matched_fragments": 65, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA4466", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900116425.1", "gtdb_species": "s__Lishizhenia tianjinensis", "ani": 76.6439, "matched_fragments": 54, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Lishizhenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002409405.1", "gtdb_species": "s__Taishania sp002409405", "ani": 76.4588, "matched_fragments": 58, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__Taishania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016178305.1", "gtdb_species": "s__CAIUKX01 sp016178305", "ani": 76.4092, "matched_fragments": 66, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__CAIUKX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018883325.1", "gtdb_species": "s__UBA952 sp018883325", "ani": 76.3359, "matched_fragments": 62, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA952", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.41, "cell_length": 0.478, "doubling_h": null, "growth_tmp": 21.666, "optimum_tmp": 28.9, "optimum_ph": 7.366, "genome_size": 4274511.2, "gc_content": 36.495, "coding_genes": 4019.333, "rRNA16S_genes": 2.0, "tRNA_genes": 40.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.8, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Crocinitomicaceae", "g__UBA4466", "s__UBA4466 sp018402525" ], "_genome_taxon": [ "Crocinitomicaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Crocinitomicaceae", "g__UBA4466", "s__UBA4466 sp018402525", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Crocinitomicaceae", "UBA4466", "UBA4466", "sp018402525" ], "_meo": [ { "id": "MEO_0000177", "label": "salt lake" } ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }