{
    "type": "genome",
    "identifier": "GCA_018433105.1",
    "organism": "Petrimonas sp.",
    "title": "Petrimonas sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018433105.1",
        "bioproject": "PRJNA655520",
        "biosample": "SAMN16056187",
        "wgs_master": "JAHDRU000000000.1",
        "refseq_category": "na",
        "taxid": "2023866",
        "species_taxid": "2023866",
        "organism_name": "Petrimonas sp.",
        "infraspecific_name": "",
        "isolate": "SV1-B9.3.2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/21",
        "asm_name": "SV1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "GCF_018433105.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/433/105/GCA_018433105.1_SV1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-21",
    "dateModified": "2021-05-21",
    "datePublished": "2021-05-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Petrimonas sp."
        ],
        "sample_taxid": [
            "2023866"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Redwood City, CA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.650 MB",
        "sample_ph_range": {
            "min": 7.0,
            "max": 7.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 77.38,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2246979",
        "Number of Sequences": "473",
        "Longest Sequences (bp)": "26462",
        "N50 (bp)": "6059",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.4",
        "Number of CDSs": "1435",
        "Average Protein Length": "333.3",
        "Coding Ratio (%)": "63.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "17",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Proteiniphilum saccharofermentans",
                "strain": "strain=M3/6",
                "accession": "GCA_900095135.1",
                "taxid": 1642647,
                "species_taxid": 1642647,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5476,
                "matched_fragments": 50,
                "total_fragments": 508,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Petrimonas mucosa",
                "strain": "strain=ING2-E5A",
                "accession": "GCA_900095795.1",
                "taxid": 1642646,
                "species_taxid": 1642646,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1463,
                "matched_fragments": 226,
                "total_fragments": 508,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Proteiniphilum acetatigenes",
                "strain": "strain=DSM 18083",
                "accession": "GCA_000380985.1",
                "taxid": 294710,
                "species_taxid": 294710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8347,
                "matched_fragments": 61,
                "total_fragments": 508,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 77.38,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002356435.2",
                "gtdb_species": "s__Petrimonas sp002356435",
                "ani": 98.6916,
                "matched_fragments": 464,
                "total_fragments": 508,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.66",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 15,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001898165.1",
                "gtdb_species": "s__Petrimonas sp001898165",
                "ani": 82.69,
                "matched_fragments": 363,
                "total_fragments": 508,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.68",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002316835.1",
                "gtdb_species": "s__Petrimonas sp002316835",
                "ani": 79.3873,
                "matched_fragments": 211,
                "total_fragments": 508,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900095795.1",
                "gtdb_species": "s__Petrimonas mucosa",
                "ani": 79.1463,
                "matched_fragments": 226,
                "total_fragments": 508,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.34",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002069095.1",
                "gtdb_species": "s__Petrimonas sp002069095",
                "ani": 78.9325,
                "matched_fragments": 155,
                "total_fragments": 508,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002383605.1",
                "gtdb_species": "s__Proteiniphilum sp002383605",
                "ani": 77.2472,
                "matched_fragments": 63,
                "total_fragments": 508,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.07",
                "min_intra_species_ani": "99.07",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.071,
        "cell_length": 0.243,
        "doubling_h": null,
        "growth_tmp": 38.5,
        "optimum_tmp": 38.5,
        "optimum_ph": 7.2,
        "genome_size": 3717631.333,
        "gc_content": 48.0,
        "coding_genes": 2934.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Dysgonomonadaceae",
        "g__Petrimonas",
        "s__Petrimonas sp002356435"
    ],
    "_genome_taxon": [
        "Petrimonas",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Dysgonomonadaceae",
        "g__Petrimonas",
        "s__Petrimonas sp002356435",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Dysgonomonadaceae",
        "Petrimonas",
        "Petrimonas",
        "sp002356435"
    ],
    "_meo": [
        {
            "id": "MEO_0001192",
            "label": "anaerobic digester"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}