{ "type": "genome", "identifier": "GCA_018433205.1", "organism": "Methanomethylovorans sp.", "title": "Methanomethylovorans sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018433205.1", "bioproject": "PRJNA655520", "biosample": "SAMN16056184", "wgs_master": "JAHDRR000000000.1", "refseq_category": "na", "taxid": "2758717", "species_taxid": "2758717", "organism_name": "Methanomethylovorans sp.", "infraspecific_name": "", "isolate": "SV1-B9.1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/21", "asm_name": "SV1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "GCF_018433205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/433/205/GCA_018433205.1_SV1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-21", "dateModified": "2021-05-21", "datePublished": "2021-05-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanomethylovorans sp." ], "sample_taxid": [ "2758717" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Redwood City, CA" ], "sample_host_location_id": [], "data_size": "0.567 MB", "sample_ph_range": { "min": 7.0, "max": 7.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1976387", "Number of Sequences": "105", "Longest Sequences (bp)": "86101", "N50 (bp)": "30782", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.4", "Number of CDSs": "1811", "Average Protein Length": "296.3", "Coding Ratio (%)": "81.4", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanomethylovorans hollandica", "strain": "strain=DSM 15978", "accession": "GCA_000328665.1", "taxid": 101192, "species_taxid": 101192, "relation_to_type": "type", "validated": true, "ani": 82.3977, "matched_fragments": 444, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanolobus tindarius", "strain": "strain=DSM 2278", "accession": "GCA_000504205.1", "taxid": 2221, "species_taxid": 2221, "relation_to_type": "type", "validated": true, "ani": 76.4302, "matched_fragments": 53, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanolobus profundi", "strain": "strain=Mob M", "accession": "GCA_900114835.1", "taxid": 487685, "species_taxid": 487685, "relation_to_type": "type", "validated": true, "ani": 76.2341, "matched_fragments": 61, "total_fragments": 601, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001896725.1", "gtdb_species": "s__Methanomethylovorans sp001896725", "ani": 99.8767, "matched_fragments": 591, "total_fragments": 601, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanomethylovorans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.81", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_002067275.1", "gtdb_species": "s__Methanomethylovorans sp002067275", "ani": 85.7757, "matched_fragments": 459, "total_fragments": 601, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanomethylovorans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000328665.1", "gtdb_species": "s__Methanomethylovorans hollandica", "ani": 82.3977, "matched_fragments": 444, "total_fragments": 601, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanomethylovorans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.56", "min_intra_species_ani": "97.48", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002067265.1", "gtdb_species": "s__Methanomethylovorans sp002067265", "ani": 80.0424, "matched_fragments": 218, "total_fragments": 601, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanomethylovorans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002508425.1", "gtdb_species": "s__Methanomethylovorans sp002508425", "ani": 79.7731, "matched_fragments": 357, "total_fragments": 601, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanomethylovorans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.067, "cell_length": -0.067, "doubling_h": 1.088, "growth_tmp": 41.0, "optimum_tmp": 40.933, "optimum_ph": 6.533, "genome_size": 2714012.4, "gc_content": 39.702, "coding_genes": 2533.333, "rRNA16S_genes": 2.0, "tRNA_genes": 50.0, "gram_stain": 0.0, "sporulation": null, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Halobacteriota", "c__Methanosarcinia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanomethylovorans", "s__Methanomethylovorans sp001896725" ], "_genome_taxon": [ "Methanomethylovorans", "sp.", "d__Archaea", "p__Halobacteriota", "c__Methanosarcinia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanomethylovorans", "s__Methanomethylovorans sp001896725", "Archaea", "Halobacteriota", "Methanosarcinia", "Methanosarcinales", "Methanosarcinaceae", "Methanomethylovorans", "Methanomethylovorans", "sp001896725" ], "_meo": [ { "id": "MEO_0000035", "label": "waste water" }, { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }