{
    "type": "genome",
    "identifier": "GCA_018433225.1",
    "organism": "Tissierellaceae bacterium",
    "title": "Tissierellaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018433225.1",
        "bioproject": "PRJNA655520",
        "biosample": "SAMN16056181",
        "wgs_master": "JAHDRP000000000.1",
        "refseq_category": "na",
        "taxid": "2562714",
        "species_taxid": "2562714",
        "organism_name": "Tissierellaceae bacterium",
        "infraspecific_name": "",
        "isolate": "SV1-B7.5",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/21",
        "asm_name": "SV1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/433/225/GCA_018433225.1_SV1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-21",
    "dateModified": "2021-05-21",
    "datePublished": "2021-05-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tissierellaceae bacterium"
        ],
        "sample_taxid": [
            "2562714"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Redwood City, CA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.534 MB",
        "sample_ph_range": {
            "min": 7.0,
            "max": 7.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1902325",
        "Number of Sequences": "217",
        "Longest Sequences (bp)": "38502",
        "N50 (bp)": "13033",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.4",
        "Number of CDSs": "1728",
        "Average Protein Length": "303.8",
        "Coding Ratio (%)": "82.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Soehngenia longivitae",
                "strain": "strain=1933P",
                "accession": "GCA_004684055.1",
                "taxid": 2562294,
                "species_taxid": 2562294,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6605,
                "matched_fragments": 398,
                "total_fragments": 523,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018434075.1",
                "gtdb_species": "s__Soehngenia_A sp018434075",
                "ani": 97.1735,
                "matched_fragments": 445,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tissierellaceae;g__Soehngenia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.20",
                "min_intra_species_ani": "97.20",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004684055.1",
                "gtdb_species": "s__Soehngenia_A longivitae",
                "ani": 83.6605,
                "matched_fragments": 398,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tissierellaceae;g__Soehngenia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.74",
                "min_intra_species_ani": "96.74",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_014360205.1",
                "gtdb_species": "s__Soehngenia_A sp014360205",
                "ani": 83.0592,
                "matched_fragments": 306,
                "total_fragments": 523,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tissierellaceae;g__Soehngenia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.182,
        "cell_length": 0.401,
        "doubling_h": 1.421,
        "growth_tmp": 34.75,
        "optimum_tmp": 36.833,
        "optimum_ph": 7.25,
        "genome_size": 2810963.0,
        "gc_content": 32.8,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Tissierellales",
        "f__Tissierellaceae",
        "g__Soehngenia",
        "s__Soehngenia sp018434075"
    ],
    "_genome_taxon": [
        "Tissierellaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Tissierellales",
        "f__Tissierellaceae",
        "g__Soehngenia",
        "s__Soehngenia sp018434075",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Tissierellales",
        "Tissierellaceae",
        "Soehngenia",
        "Soehngenia",
        "sp018434075"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        },
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}