{ "type": "genome", "identifier": "GCA_018433365.1", "organism": "Spirochaetales bacterium", "title": "Spirochaetales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018433365.1", "bioproject": "PRJNA655520", "biosample": "SAMN16056174", "wgs_master": "JAHDRI000000000.1", "refseq_category": "na", "taxid": "2026792", "species_taxid": "2026792", "organism_name": "Spirochaetales bacterium", "infraspecific_name": "", "isolate": "SV1-B6.1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/21", "asm_name": "SV1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/433/365/GCA_018433365.1_SV1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-21", "dateModified": "2021-05-21", "datePublished": "2021-05-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirochaetales bacterium" ], "sample_taxid": [ "2026792" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Redwood City, CA" ], "sample_host_location_id": [], "data_size": "0.925 MB", "sample_ph_range": { "min": 7.0, "max": 7.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.31, "contamination": 8.33, "strain_heterogeneity": 33.33, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3217943", "Number of Sequences": "457", "Longest Sequences (bp)": "67927", "N50 (bp)": "11821", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.1", "Number of CDSs": "2677", "Average Protein Length": "313.2", "Coding Ratio (%)": "78.2", "Number of rRNAs": "4", "Number of tRNAs": "43", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphaerochaeta associata", "strain": "strain=GLS2T", "accession": "GCA_022869165.1", "taxid": 1129264, "species_taxid": 1129264, "relation_to_type": "type", "validated": true, "ani": 84.4719, "matched_fragments": 649, "total_fragments": 831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerochaeta globosa", "strain": "strain=Buddy", "accession": "GCA_000190435.1", "taxid": 1131703, "species_taxid": 1131703, "relation_to_type": "type", "validated": true, "ani": 81.6191, "matched_fragments": 550, "total_fragments": 831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerochaeta halotolerans", "strain": "strain=4-11", 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"min_intra_species_af": "0.79", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.587, "cell_length": 0.858, "doubling_h": 0.794, "growth_tmp": 34.127, "optimum_tmp": 35.522, "optimum_ph": 7.957, "genome_size": 2488028.97, "gc_content": 38.889, "coding_genes": 1921.24, "rRNA16S_genes": 1.734, "tRNA_genes": 38.681, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.863, "range_salinity": 0.666, "facultative_respiration": 0.033, "anaerobic_respiration": 0.716, "aerobic_respiration": 0.25, "mesophilic_range_tmp": 0.913, "thermophilic_range_tmp": 0.043, "psychrophilic_range_tmp": 0.043, "bacillus_cell_shape": 0.046, "coccus_cell_shape": 0.069, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.023, "spiral_cell_shape": 0.86 }, "_gtdb_taxon": [ "d__Bacteria", "p__Spirochaetota", "c__Spirochaetia", "o__Sphaerochaetales", "f__Sphaerochaetaceae", "g__Sphaerochaeta", "s__Sphaerochaeta sp002432715" ], 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