{
    "type": "genome",
    "identifier": "GCA_018433595.1",
    "organism": "Synergistales bacterium",
    "title": "Synergistales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018433595.1",
        "bioproject": "PRJNA655520",
        "biosample": "SAMN16056164",
        "wgs_master": "JAHDQY000000000.1",
        "refseq_category": "na",
        "taxid": "2268201",
        "species_taxid": "2268201",
        "organism_name": "Synergistales bacterium",
        "infraspecific_name": "",
        "isolate": "SV1-B2.2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/21",
        "asm_name": "SV1",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/433/595/GCA_018433595.1_SV1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-21",
    "dateModified": "2021-05-21",
    "datePublished": "2021-05-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Synergistales bacterium"
        ],
        "sample_taxid": [
            "2268201"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Redwood City, CA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.705 MB",
        "sample_ph_range": {
            "min": 7.0,
            "max": 7.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.39,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2530233",
        "Number of Sequences": "72",
        "Longest Sequences (bp)": "310966",
        "N50 (bp)": "93956",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.4",
        "Number of CDSs": "2316",
        "Average Protein Length": "321.3",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aminomonas paucivorans",
                "strain": "strain=DSM 12260",
                "accession": "GCA_000165795.1",
                "taxid": 81412,
                "species_taxid": 81412,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0132,
                "matched_fragments": 98,
                "total_fragments": 808,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aminiphilus circumscriptus",
                "strain": "strain=DSM 16581",
                "accession": "GCA_000526375.1",
                "taxid": 290732,
                "species_taxid": 290732,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8889,
                "matched_fragments": 65,
                "total_fragments": 808,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.39,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018433595.1",
                "gtdb_species": "s__SV1-B22 sp018433595",
                "ani": 100.0,
                "matched_fragments": 804,
                "total_fragments": 808,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__SV1-B22;g__SV1-B22",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016756725.1",
                "gtdb_species": "s__SV1-B22 sp016756725",
                "ani": 82.6902,
                "matched_fragments": 463,
                "total_fragments": 808,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__SV1-B22;g__SV1-B22",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018398915.1",
                "gtdb_species": "s__SV1-B22 sp018398915",
                "ani": 81.7024,
                "matched_fragments": 476,
                "total_fragments": 808,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__SV1-B22;g__SV1-B22",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002425685.1",
                "gtdb_species": "s__Aminiphilus sp002425685",
                "ani": 77.0357,
                "matched_fragments": 64,
                "total_fragments": 808,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Aminiphilaceae;g__Aminiphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.23",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000165795.1",
                "gtdb_species": "s__Aminomonas paucivorans",
                "ani": 77.0102,
                "matched_fragments": 99,
                "total_fragments": 808,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Aminomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000526375.1",
                "gtdb_species": "s__Aminiphilus circumscriptus",
                "ani": 76.8889,
                "matched_fragments": 65,
                "total_fragments": 808,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Aminiphilaceae;g__Aminiphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018436725.1",
                "gtdb_species": "s__JAAYLU01 sp018436725",
                "ani": 76.4482,
                "matched_fragments": 66,
                "total_fragments": 808,
                "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Aminobacteriaceae;g__JAAYLU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.247,
        "cell_length": 0.407,
        "doubling_h": 0.859,
        "growth_tmp": 40.447,
        "optimum_tmp": 43.453,
        "optimum_ph": 6.983,
        "genome_size": 2474287.488,
        "gc_content": 54.082,
        "coding_genes": 2007.472,
        "rRNA16S_genes": 3.2,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.687,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.714,
        "thermophilic_range_tmp": 0.285,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.846,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.076,
        "vibrio_cell_shape": 0.076,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Synergistota",
        "c__Synergistia",
        "o__Synergistales",
        "f__Aminithiophilaceae",
        "g__Aminithiophilus",
        "s__Aminithiophilus sp018433595"
    ],
    "_genome_taxon": [
        "Synergistales",
        "bacterium",
        "d__Bacteria",
        "p__Synergistota",
        "c__Synergistia",
        "o__Synergistales",
        "f__Aminithiophilaceae",
        "g__Aminithiophilus",
        "s__Aminithiophilus sp018433595",
        "Bacteria",
        "Synergistota",
        "Synergistia",
        "Synergistales",
        "Aminithiophilaceae",
        "Aminithiophilus",
        "Aminithiophilus",
        "sp018433595"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        },
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}