{ "type": "genome", "identifier": "GCA_018433765.1", "organism": "Tissierellales bacterium", "title": "Tissierellales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018433765.1", "bioproject": "PRJNA655520", "biosample": "SAMN16056154", "wgs_master": "JAHDQO000000000.1", "refseq_category": "na", "taxid": "2053631", "species_taxid": "2053631", "organism_name": "Tissierellales bacterium", "infraspecific_name": "", "isolate": "SM3-B4.1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/21", "asm_name": "SM3", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/433/765/GCA_018433765.1_SM3", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-21", "dateModified": "2021-05-21", "datePublished": "2021-05-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Tissierellales bacterium" ], "sample_taxid": [ "2053631" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: San Mateo, CA" ], "sample_host_location_id": [], "data_size": "1.141 MB", "sample_ph_range": { "min": 7.0, "max": 7.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4186474", "Number of Sequences": "38", "Longest Sequences (bp)": "563730", "N50 (bp)": "311033", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.5", "Number of CDSs": "3861", "Average Protein Length": "314.9", "Coding Ratio (%)": "87.1", "Number of rRNAs": "2", "Number of tRNAs": "23", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sedimentibacter acidaminivorans", "strain": "strain=DSM 24004", "accession": "GCA_017873955.1", "taxid": 913099, "species_taxid": 913099, "relation_to_type": "type", "validated": true, "ani": 75.8187, "matched_fragments": 132, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Senegalia massiliensis", "strain": "strain=SIT17", "accession": "GCA_900626135.1", "taxid": 1720316, "species_taxid": 1720316, "relation_to_type": "type", "validated": true, "ani": 75.748, "matched_fragments": 116, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caminicella sporogenes", "strain": "strain=DSM 14501", "accession": "GCA_900142285.1", "taxid": 166485, "species_taxid": 166485, "relation_to_type": "type", "validated": true, "ani": 75.5925, "matched_fragments": 80, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caminicella sporogenes", "strain": "strain=AM 1114", "accession": "GCA_003609595.1", "taxid": 166485, "species_taxid": 166485, "relation_to_type": "type", "validated": true, "ani": 75.5877, "matched_fragments": 83, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromonas gelatinilytica", "strain": "strain=D2Q-14", "accession": "GCA_016820635.1", "taxid": 2683194, "species_taxid": 2683194, "relation_to_type": "type", "validated": true, "ani": 75.5214, "matched_fragments": 103, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caloranaerobacter ferrireducens", "strain": "strain=DY22619", "accession": "GCA_001730685.1", "taxid": 1323370, 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