{
    "type": "genome",
    "identifier": "GCA_018435835.1",
    "organism": "Desulfobacterales bacterium",
    "title": "Desulfobacterales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_018435835.1",
        "bioproject": "PRJNA655520",
        "biosample": "SAMN16056055",
        "wgs_master": "JAHDMV000000000.1",
        "refseq_category": "na",
        "taxid": "2044940",
        "species_taxid": "2044940",
        "organism_name": "Desulfobacterales bacterium",
        "infraspecific_name": "",
        "isolate": "R3-B25",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/21",
        "asm_name": "R3",
        "submitter": "University of California, Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/435/835/GCA_018435835.1_R3",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-21",
    "dateModified": "2021-05-21",
    "datePublished": "2021-05-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfobacterales bacterium"
        ],
        "sample_taxid": [
            "2044940"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Richmond, CA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.124 MB",
        "sample_ph_range": {
            "min": 7.0,
            "max": 7.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.31,
        "contamination": 4.55,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3920240",
        "Number of Sequences": "628",
        "Longest Sequences (bp)": "51357",
        "N50 (bp)": "8787",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.2",
        "Number of CDSs": "2939",
        "Average Protein Length": "300.7",
        "Coding Ratio (%)": "67.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.31,
            "contamination": 4.55,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018432925.1",
                "gtdb_species": "s__JAHDSC01 sp018432925",
                "ani": 99.1375,
                "matched_fragments": 809,
                "total_fragments": 993,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__JAHDSC01;g__JAHDSC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "99.14",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002347265.1",
                "gtdb_species": "s__UBA2245 sp002347265",
                "ani": 77.8742,
                "matched_fragments": 63,
                "total_fragments": 993,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA2245;g__UBA2245",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.30",
                "min_intra_species_ani": "96.30",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.067,
        "cell_length": 0.331,
        "doubling_h": 1.346,
        "growth_tmp": 27.625,
        "optimum_tmp": 30.189,
        "optimum_ph": 7.333,
        "genome_size": 5179223.747,
        "gc_content": 51.027,
        "coding_genes": 4062.428,
        "rRNA16S_genes": 3.857,
        "tRNA_genes": 52.571,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.645,
        "range_salinity": 1.0,
        "facultative_respiration": 0.02,
        "anaerobic_respiration": 0.979,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.833,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.166,
        "bacillus_cell_shape": 0.702,
        "coccus_cell_shape": 0.027,
        "filament_cell_shape": 0.108,
        "coccobacillus_cell_shape": 0.081,
        "vibrio_cell_shape": 0.081,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobacteria",
        "o__Desulfobacterales",
        "f__JAHDSC01",
        "g__JAHDSC01",
        "s__JAHDSC01 sp018432925"
    ],
    "_genome_taxon": [
        "Desulfobacterales",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfobacteria",
        "o__Desulfobacterales",
        "f__JAHDSC01",
        "g__JAHDSC01",
        "s__JAHDSC01 sp018432925",
        "Bacteria",
        "Desulfobacterota",
        "Desulfobacteria",
        "Desulfobacterales",
        "JAHDSC01",
        "JAHDSC01",
        "JAHDSC01",
        "sp018432925"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        },
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}