{ "type": "genome", "identifier": "GCA_018436025.1", "organism": "Methanoculleus sp.", "title": "Methanoculleus sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of California, Berkeley", "publication": [ {} ], "properties": { "assembly_accession": "GCA_018436025.1", "bioproject": "PRJNA655520", "biosample": "SAMN16056045", "wgs_master": "JAHDML000000000.1", "refseq_category": "na", "taxid": "90427", "species_taxid": "90427", "organism_name": "Methanoculleus sp.", "infraspecific_name": "", "isolate": "R1-B15.4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/21", "asm_name": "R1", "submitter": "University of California, Berkeley", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/436/025/GCA_018436025.1_R1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-21", "dateModified": "2021-05-21", "datePublished": "2021-05-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanoculleus sp." ], "sample_taxid": [ "90427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Richmond, CA" ], "sample_host_location_id": [], "data_size": "0.459 MB", "sample_ph_range": { "min": 7.0, "max": 7.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.71, "contamination": 4.02, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1586019", "Number of Sequences": "633", "Longest Sequences (bp)": "39089", "N50 (bp)": "2803", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.1", "Number of CDSs": "1090", "Average Protein Length": "244.4", "Coding Ratio (%)": "50.4", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanoculleus sediminis", "strain": "strain=S3Fa", "accession": "GCA_001017125.1", "taxid": 1550566, "species_taxid": 1550566, "relation_to_type": "type", "validated": true, "ani": 81.3343, "matched_fragments": 123, "total_fragments": 191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus horonobensis", "strain": "strain=T10", "accession": "GCA_001602375.1", "taxid": 528314, "species_taxid": 528314, "relation_to_type": "type", "validated": true, "ani": 81.0365, "matched_fragments": 123, "total_fragments": 191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanoculleus marisnigri", "strain": "strain=JR1", "accession": "GCA_000015825.1", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018433835.1", "gtdb_species": "s__Methanoculleus sp018433835", "ani": 80.9291, "matched_fragments": 118, "total_fragments": 191, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002498065.1", "gtdb_species": "s__Methanoculleus sp002498065", "ani": 80.7491, "matched_fragments": 117, "total_fragments": 191, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002839575.1", "gtdb_species": "s__Methanoculleus sp002839575", "ani": 79.9071, "matched_fragments": 111, "total_fragments": 191, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.042, "cell_length": -0.042, "doubling_h": 0.977, "growth_tmp": 40.952, "optimum_tmp": 40.204, "optimum_ph": 6.907, "genome_size": 2441843.114, "gc_content": 60.765, "coding_genes": 2468.875, "rRNA16S_genes": 1.0, "tRNA_genes": 48.166, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 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"\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }